>SSI673 (SSI673Q) /CSM/SS/SSI6-D/SSI673Q.Seq.d/
ATTTGTAGCACCACCAATGGCAATCAGAATTTTTAGATCCTTCTCAGAGTATGTTGGTAA
AGGTATACTAAAGAGTGACAAGAATGATTATCTAATAAAGAGTACCTACACTTCAAAACC
ATTATTTGGTGGAGTTTACAATGGTTTTGAATCCAAGGTTTATAAAGGTAAAGAGAAACT
ATACAAAATTAAAGGAACTTGGAGTGGTGATATGAAAATTACAAATTTGAAAACCAATGA
AACTACCCCATTCTTCACTAGACCAACAGAATCAGCTAAAGTTGTTTTCCCAGATGATGG
CAATACTCTTCCAACTGATTCATCTGTAGTTTGGAAAGGTGTTTTCGATGCTTCCAAAAA
AGATGATGTCAAAGGTATGTCCCAAGAAAAAGTTAAAGTTGAAGAAGAACAAAGAAAATT
AGCTCATCATAGAAAAAATGCTGATGAATGGAAACCAGTCCATTTCAATAAAATTGATGG
TAGATGGCAATTAGTTAATCTAAAGGATTAATTTAATTAATTTTTTTTTTTTTTCATATA
AXXXXXXXXXX

FVAPPMAIRIFRSFSEYVGKGILKSDKNDYLIKSTYTSKPLFGGVYNGFESKVYKGKEKL
YKIKGTWSGDMKITNLKTNETTPFFTRPTESAKVVFPDDGNTLPTDSSVVWKGVFDASKK
DDVKGMSQEKVKVEEEQRKLAHHRKNADEWKPVHFNKIDGRWQLVNLKD*fn*fffffi-
--

Frame A:
icsttngnqnf*illrvcw*rytke*qe*lsnkeylhfktiiwwslqwf*iqgl*r*ret
iqn*rnlew*yenykfenq*nypilh*tnris*scfpr*wqyssn*ficslercfrcfqk
r*cqryvprks*s*rrtkkisss*kkc**metspfq*n*w*mais*skgli*liffffhi
---


Frame B:
FVAPPMAIRIFRSFSEYVGKGILKSDKNDYLIKSTYTSKPLFGGVYNGFESKVYKGKEKL
YKIKGTWSGDMKITNLKTNETTPFFTRPTESAKVVFPDDGNTLPTDSSVVWKGVFDASKK
DDVKGMSQEKVKVEEEQRKLAHHRKNADEWKPVHFNKIDGRWQLVNLKD*fn*fffffi-
--


Frame C:
l*hhqwqsefldpsqsmlvkvy*rvtrmii**rvptlqnhylveftmvlnprfikvkrny
tklkelgvvi*klqi*kpmklphssldqqnqlklfsqmmailfqlihl*fgkvfsmlpkk
mmskvcpkkklklkknken*liiekmlmngnqsisiklmvdgn*li*rinlinffffsy-
--

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK295 (SSK295Q) /CSM/SS/SSK2-D/SSK295Q.Seq.d/                       1031   0.0
SSI673 (SSI673Q) /CSM/SS/SSI6-D/SSI673Q.Seq.d/                       1031   0.0
SSG759 (SSG759Q) /CSM/SS/SSG7-C/SSG759Q.Seq.d/                       1023   0.0
SSJ873 (SSJ873Q) /CSM/SS/SSJ8-D/SSJ873Q.Seq.d/                       1003   0.0
SSH870 (SSH870Q) /CSM/SS/SSH8-C/SSH870Q.Seq.d/                        844   0.0
SSI261 (SSI261Q) /CSM/SS/SSI2-C/SSI261Q.Seq.d/                        837   0.0
SSD412 (SSD412Q) /CSM/SS/SSD4-A/SSD412Q.Seq.d/                        743   0.0
SSB226 (SSB226Q) /CSM/SS/SSB2-B/SSB226Q.Seq.d/                        690   0.0
SLH741 (SLH741Q) /CSM/SL/SLH7-B/SLH741Q.Seq.d/                        686   0.0
SSF810 (SSF810Q) /CSM/SS/SSF8-A/SSF810Q.Seq.d/                        581   e-165

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ488770|AJ488770.1 Dictyostelium discoideum mRNA for OSBPa protein (osbA gene).  1013  0.0  1
BQ235743|BQ235743.1 hd85b11.g1 Canis Total Brain cDNAs Canis familiaris cDNA clone hd85b11 5', mRNA sequence.    48  0.11  1
BZ389256|BZ389256.1 EINEB18TF EI_10_12_KB Entamoeba invadens genomic clone EINEB18, DNA sequence.    36  0.36  2
AL049814|AL049814.6 Human DNA sequence from clone RP1-1C16 on chromosome 6p12.2-21.1  Contains an STS and GSSs.    46  0.45  1
AL512350|AL512350.7 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-150D3.    46  0.45  1
AP004174|AP004174.1 Mycoplasma penetrans genomic DNA, complete sequence, section 5/5.    40  1.5  6
AC025823|AC025823.6 Homo sapiens chromosome 10 clone RP11-60H16, WORKING DRAFT SEQUENCE, 7 unordered pieces.    40  1.5  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    44  1.8  1
AQ028392|AQ028392.1 CIT-HSP-2323O13.TR CIT-HSP Homo sapiens genomic clone 2323O13, genomic survey sequence.    44  1.8  1
AC016920|AC016920.14 Homo sapiens 3 BAC RP11-203L15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  1.8  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8MPQ7) RecName: Full=Oxysterol-binding protein 1; AltName: Ful...   328   4e-89
(Q86KG4) RecName: Full=Oxysterol-binding protein 4; AltName: Ful...    53   5e-06
(Q86HV4) RecName: Full=Oxysterol-binding protein 6; AltName: Ful...    53   6e-06
CR382127_84(CR382127|pid:none) Yarrowia lipolytica strain CLIB12...    46   7e-04
CP000501_243(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...    45   0.001
T40287(T40287)hypothetical protein SPBC354.07c - fission yeast  ...    44   0.004
AB040967_1(AB040967|pid:none) Homo sapiens mRNA for KIAA1534 pro...    42   0.014
AK293000_1(AK293000|pid:none) Homo sapiens cDNA FLJ78486 complet...    42   0.014
FN392319_1052(FN392319|pid:none) Pichia pastoris GS115 chromosom...    42   0.014
AK301003_1(AK301003|pid:none) Homo sapiens cDNA FLJ51506 complet...    42   0.014

 psg: 0.66  gvh: 0.34  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SSI673 is cyt

>SSI673F.Seq
ATTTGTAGCACCACCAATGGCAATCAGAATTTTTAGATCCTTCTCAGAGTATGTTGGTAA
AGGTATACTAAAGAGTGACAAGAATGATTATCTAATAAAGAGTACCTACACTTCAAAACC
ATTATTTGGTGGAGTTTACAATGGTTTTGAATCCAAGGTTTATAAAGGTAAAGAGAAACT
ATACAAAATTAAAGGAACTTGGAGTGGTGATATGAAAATTACAAATTTGAAAACCAATGA
AACTACCCCATTCTTCACTAGACCAACAGAATCAGCTAAAGTTGTTTTCCCAGATGATGG
CAATACTCTTCCAACTGATTCATCTGTAGTTTGGAAAGGTGTTTTCGATGCTTCCAAAAA
AGATGATGTCAAAGGTATGTCCCAAGAAAAAGTTAAAGTTGAAGAAGAACAAAGAAAATT
AGCTCATCATAGAAAAAATGCTGATGAATGGAAACCAGTCCATTTCAATAAAATTGATGG
TAGATGGCAATTAGTTAATCTAAAGGATTAATTTAATTAATTTTTTTTTTTTTTCATATA
A----------