>SSI671 (SSI671Q) /CSM/SS/SSI6-C/SSI671Q.Seq.d/
GCCCAGAAAATCCAAGTTGTCCTGGTGGTAAAATTCAAACTTTTACTCGTTCCGTTAATC
GTTGTCCAATCTTTAACAAATGCGTAAATAGAGGTGTCTGTCATCTTGGAATTCCTCATT
GTCCAGTTGGTTATACTTCTTATTCTTTACAATCTGCTCCAAATGGTTGTTTAAAGTATT
ATTGTGATCCTGATTCTTTACCAAATCCATCAACTGTTTTAGGTCCTTAAAATAAAAATA
AAAATGAAAATATGACTTTTTATTTTTTAAAATCAAAATAACAAAAACATATTTTCATTT
TTATTGTTTTTTTTTTTTTTTAAAATCAAATCAGTGGATAGAATAAAAAAATTTAAATAA
AATAGTTATTACCTTTTTTTTTTTAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAXXXXXXXXXX

PENPSCPGGKIQTFTRSVNRCPIFNKCVNRGVCHLGIPHCPVGYTSYSLQSAPNGCLKYY
CDPDSLPNPSTVLGP*nknknenmtfyflksk*qkhififivffff*nqisg*nkki*ik
*llpfff*nkkkkkkkkkkkkkkkk---

Frame A:
aqkiqvvlvvkfklllvplivvqsltna*ievsvileflivqlvillilynllqmvv*si
ivililyqihqlf*vlkikikmki*lfif*nqnnknifsfllfffffkiksvdrikkfk*
nsyylfffktkkkkkkkkkkkkkkkk---


Frame B:
prksklsww*nsnfysfr*slsnl*qmrk*rclsswnsslsswlyflffticskwlfkvl
l*s*fftksincfrslk*k*k*kydflffkikitktyfhfycfffflksnqwie*knlnk
ivitffflkqkkkkkkkkkkkkkkkk---


Frame C:
PENPSCPGGKIQTFTRSVNRCPIFNKCVNRGVCHLGIPHCPVGYTSYSLQSAPNGCLKYY
CDPDSLPNPSTVLGP*nknknenmtfyflksk*qkhififivffff*nqisg*nkki*ik
*llpfff*nkkkkkkkkkkkkkkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL678 (SSL678Q) /CSM/SS/SSL6-D/SSL678Q.Seq.d/                        446   e-124
SSL535 (SSL535Q) /CSM/SS/SSL5-B/SSL535Q.Seq.d/                        446   e-124
SSK179 (SSK179Q) /CSM/SS/SSK1-D/SSK179Q.Seq.d/                        446   e-124
SSI764 (SSI764Q) /CSM/SS/SSI7-C/SSI764Q.Seq.d/                        446   e-124
SSI671 (SSI671Q) /CSM/SS/SSI6-C/SSI671Q.Seq.d/                        446   e-124
SSI633 (SSI633Q) /CSM/SS/SSI6-B/SSI633Q.Seq.d/                        446   e-124
SSH448 (SSH448Q) /CSM/SS/SSH4-B/SSH448Q.Seq.d/                        446   e-124
SSH380 (SSH380Q) /CSM/SS/SSH3-D/SSH380Q.Seq.d/                        446   e-124
SSH329 (SSH329Q) /CSM/SS/SSH3-B/SSH329Q.Seq.d/                        446   e-124
SSH288 (SSH288Q) /CSM/SS/SSH2-D/SSH288Q.Seq.d/                        446   e-124

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH165868|BH165868.1 ENTTO23TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.021  2
BX565067|BX565067.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse75d04_p1c.    50  0.023  1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    54  0.030  2
AC025152|AC025152.8 Mus musculus clone RP23-113K2 strain C57BL6/J, WORKING DRAFT SEQUENCE, 63 unordered pieces.    48  0.092  1
AV229681|AV229681.1 Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4631416J04, 3' end partial sequence.    48  0.092  1
AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    48  0.092  1
AI661545|AI661545.1 va53c02.x1 Soares mouse 3NME12 5 Mus musculus cDNA clone IMAGE:735074 3', mRNA sequence.    48  0.092  1
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    48  0.092  1
BB688612|BB688612.1 Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820438B19, 3' end partial sequence.    48  0.092  1
BB054496|BB054496.1 Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720471N12, 3' end partial sequence.    48  0.092  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    68   9e-11
AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...    65   1e-09
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...    58   1e-07
EU854565_1(EU854565|pid:none) Danio rerio fibrillin 4 (fbn4) mRN...    41   0.011
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...    39   0.073
CU138540_8(CU138540|pid:none) Zebrafish DNA sequence from clone ...    34   1.4
BC162468_1(BC162468|pid:none) Danio rerio jagged 1a, mRNA (cDNA ...    34   1.8
A49175(A49175;PH1570;S32113) Motch B protein - mouse (fragment) ...    34   1.8
BC172642_1(BC172642|pid:none) Synthetic construct Mus musculus c...    34   1.8
AL844508_104(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    33   2.3

 psg: 0.71  gvh: 0.40  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSI671 is cyt

>SSI671F.Seq
GCCCAGAAAATCCAAGTTGTCCTGGTGGTAAAATTCAAACTTTTACTCGTTCCGTTAATC
GTTGTCCAATCTTTAACAAATGCGTAAATAGAGGTGTCTGTCATCTTGGAATTCCTCATT
GTCCAGTTGGTTATACTTCTTATTCTTTACAATCTGCTCCAAATGGTTGTTTAAAGTATT
ATTGTGATCCTGATTCTTTACCAAATCCATCAACTGTTTTAGGTCCTTAAAATAAAAATA
AAAATGAAAATATGACTTTTTATTTTTTAAAATCAAAATAACAAAAACATATTTTCATTT
TTATTGTTTTTTTTTTTTTTTAAAATCAAATCAGTGGATAGAATAAAAAAATTTAAATAA
AATAGTTATTACCTTTTTTTTTTTAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA----------