>SSI664 (SSI664Q) /CSM/SS/SSI6-C/SSI664Q.Seq.d/
XXXXXXXXXXCCGATCTCTTAATTCGTAAACTCCCATTCCAACGTTTAGTCAGGGAAATC
GCCCAAGAATTCAAAACCGATCTTCGTTTCCAATTTGCCGCCATCGGTGCCCTTCAAGAA
GCCTTTGAAGCTTACTTGGTTGGTTTTTTCGAAGATACCAATTTTTGTGCCATCCACGCT
AAACGTGTTACTTTCATGCCAAAAGATTTTCCCTTAGCCAGACGTTTCAGGGGTGAAAGA
TCATAAAGGGTTTATTTTTATTTTTTAACAAAAAAAAAAAAAAAAAAAAAAAAACAAAAC
TATTCAACTCATTTGTAAATTTTNATNNATATAATTCCATAAAAAAAAAAAGAAAAAAAA
AAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTTTA
AATAAAGATAATGTTATTTAATTA

---DLLIRKLPFQRLVREIAQEFKTDLRFQFAAIGALQEAFEAYLVGFFEDTNFCAIHAK
RVTFMPKDFPLARRFRGERS*rvyfyfltkkkkkkkkqnysthl*ixxxiip*kkkekkk
rkkkkrkkkkkkkknffflnkdnvi*l

Frame A:
---rslns*tpiptfsqgnrpriqnrssfpicrhrcpsrsl*sllgwffrryqflchpr*
tcyfhakrfslsqtfqg*kiikglflffnkkkkkkkktklfnsfvnfxxynsikkkrkkk
kkkkkkkkkkkkkkkffffk*r*cyli


Frame B:
---DLLIRKLPFQRLVREIAQEFKTDLRFQFAAIGALQEAFEAYLVGFFEDTNFCAIHAK
RVTFMPKDFPLARRFRGERS*rvyfyfltkkkkkkkkqnysthl*ixxxiip*kkkekkk
rkkkkrkkkkkkkknffflnkdnvi*l


Frame C:
---is*fvnshsnv*sgkspknskpifvsnlppsvpfkkplkltwlvfskipifvpstln
vllscqkifp*pdvsgvkdhkgfifif*qkkkkkkknktiqlickfxxi*fhkkkkkkkk
ekkkkekkkkkkkkifff*ikimlfn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI664 (SSI664Q) /CSM/SS/SSI6-C/SSI664Q.Seq.d/                        513   e-145
SSI245 (SSI245Q) /CSM/SS/SSI2-B/SSI245Q.Seq.d/                        436   e-121
SSG286 (SSG286Q) /CSM/SS/SSG2-D/SSG286Q.Seq.d/                        426   e-118
VSF896 (VSF896Q) /CSM/VS/VSF8-D/VSF896Q.Seq.d/                        418   e-116
VSF191 (VSF191Q) /CSM/VS/VSF1-D/VSF191Q.Seq.d/                        418   e-116
VSC276 (VSC276Q) /CSM/VS/VSC2-D/VSC276Q.Seq.d/                        418   e-116
VSA813 (VSA813Q) /CSM/VS/VSA8-A/VSA813Q.Seq.d/                        418   e-116
SSM830 (SSM830Q) /CSM/SS/SSM8-B/SSM830Q.Seq.d/                        418   e-116
SSM623 (SSM623Q) /CSM/SS/SSM6-A/SSM623Q.Seq.d/                        418   e-116
SSM431 (SSM431Q) /CSM/SS/SSM4-B/SSM431Q.Seq.d/                        418   e-116

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U76664|U76664.1 Dictyostelium discoideum histone H3 (DdH3) mRNA, complete cds.   381  e-102  1
AA934210|AA934210.1 SWOvL3CAN09C03 Onchocerca volvulus infective larva cDNA (SAW94WL-OvL3) Onchocerca volvulus cDNA clone onch315 5' similar to gb:M11353 HISTONE H3.3 (HUMAN);, mRNA sequence.   121  8e-24  1
AI110533|AI110533.1 SWOvL3CAN62D08SK Onchocerca volvulus infective larva cDNA (SAW94WL-OvL3) Onchocerca volvulus cDNA clone SWOvL3CAN62D08 5', mRNA sequence.   121  8e-24  1
AW980148|AW980148.1 SWOvL2CAS04D02SK Onchocerca volvulus L2 larvae cDNA (SAW98MLW-OvL2) Onchocerca volvulus cDNA clone SWOvL2CAS04D02 5', mRNA sequence.   121  8e-24  1
BG809037|BG809037.1 SWOv3MCAM60F06SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWOv3MCAM60F06 5', mRNA sequence.   121  8e-24  1
AA294001|AA294001.1 SWOv3MCA1376SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWmL3CO1376 5', mRNA sequence.   121  8e-24  1
AT003793|AT003793.1 Pyrocoelia rufa whole body cDNA, clone:PRB-37, similar to histone h3 mRNA, partial.   119  3e-23  1
AA294369|AA294369.1 SWOv3MCA550SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWmL3CO550 5', mRNA sequence.   119  3e-23  1
AW257785|AW257785.1 SWOv3MCAM31H08SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWOv3MCAM31H08 5', mRNA sequence.   113  2e-21  1
AI055784|AI055784.1 SWOvL3CAN57A03SK Onchocerca volvulus infective larva cDNA (SAW94WL-OvL3) Onchocerca volvulus cDNA clone SWOvL3CAN57A03 5', mRNA sequence.   107  1e-19  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q27532) RecName: Full=Histone H3.3-like type 2;  &T26178(T26178...   132   5e-30
(Q8WSF1) RecName: Full=Histone H3.3;  &AF323993_1(AF323993|pid:n...   131   6e-30
CR762083_1(CR762083|pid:none) Xenopus tropicalis finished cDNA, ...   131   6e-30
(P84243) RecName: Full=Histone H3.3;  &(P84245) RecName: Fu &(P8...   131   6e-30
AB098793_1(AB098793|pid:none) Bos taurus mRNA for similar to H3 ...   131   6e-30
(Q10453) RecName: Full=Histone H3.3 type 1;  &FB335644_1(FB33564...   131   6e-30
AY533212_1(AY533212|pid:none) Chinchilla lanigera histone H3.3B ...   131   6e-30
DQ217325_1(DQ217325|pid:none) Taeniopygia guttata clone 0065P001...   131   6e-30
AB098824_1(AB098824|pid:none) Bos taurus mRNA for similar to H3 ...   131   6e-30
(Q9U281) RecName: Full=Histone H3.3 type 2;  &FB335642_1(FB33564...   131   6e-30

 psg: 0.52  gvh: 0.38  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.10  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSI664 is cyt

>SSI664Z.Seq
----------CCGATCTCTTAATTCGTAAACTCCCATTCCAACGTTTAGTCAGGGAAATC
GCCCAAGAATTCAAAACCGATCTTCGTTTCCAATTTGCCGCCATCGGTGCCCTTCAAGAA
GCCTTTGAAGCTTACTTGGTTGGTTTTTTCGAAGATACCAATTTTTGTGCCATCCACGCT
AAACGTGTTACTTTCATGCCAAAAGATTTTCCCTTAGCCAGACGTTTCAGGGGTGAAAGA
TCATAAAGGGTTTATTTTTATTTTTTAACAAAAAAAAAAAAAAAAAAAAAAAAACAAAAC
TATTCAACTCATTTGTAAATTTTNATNNATATAATTCCATAAAAAAAAAAAGAAAAAAAA
AAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTTTA
AATAAAGATAATGTTATTTAATTA