SSI661
Library SS
(Link to library)
Clone ID SSI661
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15045-1
Original site URL
Representative seq. ID SSI661P
(Link to Original site)
Representative DNA sequence
>SSI661 (SSI661Q) /CSM/SS/SSI6-C/SSI661Q.Seq.d/
ATAAATGAAGAAAGGTATACAAAAAAAAACACCTTTTATCGATAAAAGCCAAATACTAAA
TAAAATTAATTAATGTGGCGTAACATAAAATTAATTAAAACAAACAAATTAATATACTTT
ATTATTTTTTTTTTTTACGAGGCAAAAAATAAATAATTATTATTTTTAACTTTTTTTTTT
AAACACCATACCATTTTTTAAAAAATAAATAATTATTATTTTTAACTTTTTTTTTATTAT
TTCTTTGTTTTCCAAAATTCTCCTAATTTAAGTTTCGCCATTGTTTATTAAAAAAAAAAA
AAAAAAATTTCTAGGATGATTAGAATAATTAATGGACAAACTTATTTCGCATCAAAATAC
CCAAATATTATAATACCAGAGAAACTAATACCTCAATTAATTTTAAAACATATTAGATCT
AAACCTGATCAAGTTTTATTAGTTGATGGTTTAACTTTTAAAGAATATTCTTCTCATTTT
GTCGCTGATACAATTGAAAAGCATAAACACAATACCATTTTAAAAAAAAAATTAAAAATT
TAAGGATGATTAGAATAATTAATGGACAAACTTATTTCACATCAAAATACCCAAATATTA
TAATACCAGXXXXXXXXXXGCTAAAATCATCTCTTCAGAGACTGGTGAGAATTTAGGTAT
GGGTGAAAAGGGTGAAATCTGTATTAAAGGTCCAAATGTTATGTTGGGTTATTATAACAA
TGAAAGGCAACCAATGAAGTCATAGATAAAGATGGATTCTTAAAAACTGGTGATATTGGT
TATGTTGATGAAGATGGTTATTTCTTTATCATCGATAGATCAAAGGAATTGATCAAATGT
AAAGGTTTCCAAGTACCACCTGCTGAATTAGAAGCATTACTATTATCTCATCCAAAAGTT
GCAGATGCCTGTGTAGTAGGTCTTTCAAAAGGTGATATGGGTGAAGTACCAAGAGGTTTC
GTTGTTATTAAACAAAATGAATCTCTTACTGAAAAAGAACTCTTGGATTGGGCTCACCCA
AAAATTGCAAATTATAAACATTTCAGAGGTGGTATCTTTTTCATACCTGCAATTCCTAAA
TCTGCAACTGGTAAACTATTACGTAAAAATCTTAAAGATTTTAATAATCTAAAATTATAA
AATTTTAAAAAAAGGTGTTAATTTTCCACTTTGACCAACAAGATTTTTCAAATTAATTTA
TTTATATAATGTAGGAAACCAAAATGCCAACAAATAAAATTTTAAGATATATCATAAAAA
AAAAAAAAAA
sequence update 1998.11.12
Translated Amino Acid sequence
k*rkvykkkhllsikaky*iklinva*hkin*nkqinilyyffflrgkk*iiiifnfff*
tpyhflknk*llfltffllflcfpkfs*fkfrhcllkkkkknf*dd*nn*wtnlfrikip
kyyntretntsinfkty*i*t*ssfis*wfnf*riffsfcr*yn*ka*TQYHFKKKIKNL
RMIRIINGQTYFTSKYPNIIIP---

---AKIISSETGENLGMGEKGEICIKGPNVMLGYYNNERQPMKS*ikmds*klvilvmlm
kmvislssidqrn*snvkvskyhlln*khyyyliqklqmpv**vfqkviwvkyqevslll
nkmnlllkknswigltqklqiinisevvsfsylqflnlqlvnyyvkilkilii*nykilk
kgvnfpl*ptrffkliylynvgnqnank*nfkiyhkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
ineerytkkntfyr*kpntk*n*lmwrnikliktnkliyfiifffyeaknk*llfltfff
khhtif*kinnyyf*lffyyffvfqnspnlsfaivy*kkkkkisrmiriingqtyfasky
pniiipeklipqlilkhirskpdqvllvdgltfkeysshfvadtiekhkhntilkkklki
*g*le*lmdklishqntqil*yq---

---AKIISSETGENLGMGEKGEICIKGPNVMLGYYNNERQPMKS*ikmds*klvilvmlm
kmvislssidqrn*snvkvskyhlln*khyyyliqklqmpv**vfqkviwvkyqevslll
nkmnlllkknswigltqklqiinisevvsfsylqflnlqlvnyyvkilkilii*nykilk
kgvnfpl*ptrffkliylynvgnqnank*nfkiyhkkkkk

Frame B:
*mkkgiqkktpfidksqilnkin*cgvt*n*lkqtn*ytllfffftrqkinnyyf*lffl
ntipffkk*iiiifnfffiislfskilli*vsplfikkkkkkflg*le*lmdklishqnt
qil*yqrn*yln*f*nildlnlikfy*lmv*llknillilsliqlksintipf*kkn*kf
kdd*nn*wtnlfhikipkyynt---

---lksslqrlvri*vwvkrvksvlkvqmlcwviitmkgnq*shr*rwilknw*ywlc**
rwlflyhr*ikgidqm*rfpsttc*irsitiisskscrclcsrsfkr*yg*stkrfrcy*
tk*isy*krtlglgspknckl*tfqrwylfhtcns*icnw*tit*ks*rf**skiikf*k
kvlifhfdqqdfsn*fiyim*etkmptnkilryiikkkk

Frame C:
k*rkvykkkhllsikaky*iklinva*hkin*nkqinilyyffflrgkk*iiiifnfff*
tpyhflknk*llfltffllflcfpkfs*fkfrhcllkkkkknf*dd*nn*wtnlfrikip
kyyntretntsinfkty*i*t*ssfis*wfnf*riffsfcr*yn*ka*TQYHFKKKIKNL
RMIRIINGQTYFTSKYPNIIIP---

---*nhlfrdw*efryg*kg*nly*rskcyvgll*q*katnevidkdgflktgdigyvde
dgyffiidrskelikckgfqvppaelealllshpkvadacvvglskgdmgevprgfvvik
qnesltekelldwahpkianykhfrggiffipaipksatgkllrknlkdfnnlkl*nfkk
rc*fstltnkifqinlfi*crkpkcqqikf*dis*kkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI661 (SSI661Q) /CSM/SS/SSI6-C/SSI661Q.Seq.d/ 1719 0.0
SSA391 (SSA391Q) /CSM/SS/SSA3-D/SSA391Q.Seq.d/ 882 0.0
CFA204 (CFA204Q) /CSM/CF/CFA2-A/CFA204Q.Seq.d/ 846 0.0
AFM809 (AFM809Q) /CSM/AF/AFM8-A/AFM809Q.Seq.d/ 289 5e-77
SSL672 (SSL672Q) /CSM/SS/SSL6-C/SSL672Q.Seq.d/ 44 0.005
SSI782 (SSI782Q) /CSM/SS/SSI7-D/SSI782Q.Seq.d/ 44 0.005
VSH885 (VSH885Q) /CSM/VS/VSH8-D/VSH885Q.Seq.d/ 42 0.021
SSJ371 (SSJ371Q) /CSM/SS/SSJ3-C/SSJ371Q.Seq.d/ 42 0.021
SHJ601 (SHJ601Q) /CSM/SH/SHJ6-A/SHJ601Q.Seq.d/ 42 0.021
FC-AJ04 (FC-AJ04Q) /CSM/FC/FC-AJ/FC-AJ04Q.Seq.d/ 42 0.021

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AX344572|AX344572.1 Sequence 23 from Patent WO0200932. 40 1e-07 10
AE001398|AE001398.1 Plasmodium falciparum chromosome 2, section 35 of 73 of the complete sequence. 40 6e-07 8
AF008183|AF008183.1 Populus balsamifera subsp. trichocarpa X Populus deltoides 4-coumarate:CoA ligase 2 (4CL2) mRNA, complete cds. 58 2e-06 2
AX345423|AX345423.1 Sequence 494 from Patent WO0200928. 38 4e-06 7
AX251068|AX251068.1 Sequence 36 from Patent WO0168912. 38 4e-06 7
AX344559|AX344559.1 Sequence 10 from Patent WO0200932. 36 8e-06 10
AX344560|AX344560.1 Sequence 11 from Patent WO0200932. 38 1e-05 15
AX344552|AX344552.1 Sequence 3 from Patent WO0200932. 38 1e-05 14
AX356424|AX356424.1 Sequence 58 from Patent WO0181622. 32 3e-05 8
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 44 4e-05 10
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54P79) RecName: Full=Probable 4-coumarate--CoA ligase 3; ... 253 3e-82
(Q54P77) RecName: Full=Probable 4-coumarate--CoA ligase 1; ... 252 4e-81
(Q54P78) RecName: Full=Probable 4-coumarate--CoA ligase 2; ... 250 3e-80
(Q26304) RecName: Full=Luciferin 4-monooxygenase; Short... 143 5e-40
AF486801_1(AF486801|pid:none) Hotaria tsushimana isolate T2 luci... 142 7e-40
L39929_1(L39929|pid:none) Hotaria parvula (clone pB-Hp) lucifera... 140 2e-39
L39928_1(L39928|pid:none) Pyrocoelia miyako (clone pB-PmL41) luc... 136 9e-39
EF155570_1(EF155570|pid:none) Pyrocoelia pectoralis luciferase m... 136 9e-39
AY447202_1(AY447202|pid:none) Pyrocoelia rufa luciferase gene, c... 136 9e-39
AY742225_1(AY742225|pid:none) Lampyris turkestanicus luciferase ... 135 2e-38
protein update 2009. 6.13
PSORT

psg: 0.61 gvh: 0.24 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.44 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: mitochondrial
24.0 %: nuclear
12.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for SSI661 is mit

5' end seq. ID SSI661F
5' end seq.
>SSI661F.Seq
ATAAATGAAGAAAGGTATACAAAAAAAAACACCTTTTATCGATAAAAGCCAAATACTAAA
TAAAATTAATTAATGTGGCGTAACATAAAATTAATTAAAACAAACAAATTAATATACTTT
ATTATTTTTTTTTTTTACGAGGCAAAAAATAAATAATTATTATTTTTAACTTTTTTTTTT
AAACACCATACCATTTTTTAAAAAATAAATAATTATTATTTTTAACTTTTTTTTTATTAT
TTCTTTGTTTTCCAAAATTCTCCTAATTTAAGTTTCGCCATTGTTTATTAAAAAAAAAAA
AAAAAAATTTCTAGGATGATTAGAATAATTAATGGACAAACTTATTTCGCATCAAAATAC
CCAAATATTATAATACCAGAGAAACTAATACCTCAATTAATTTTAAAACATATTAGATCT
AAACCTGATCAAGTTTTATTAGTTGATGGTTTAACTTTTAAAGAATATTCTTCTCATTTT
GTCGCTGATACAATTGAAAAGCATAAACACAATACCATTTTAAAAAAAAAATTAAAAATT
TAAGGATGATTAGAATAATTAATGGACAAACTTATTTCACATCAAAATACCCAAATATTA
TAATACCAG----------
Length of 5' end seq. 609
3' end seq. ID SSI661Z
3' end seq.
>SSI661Z.Seq
----------GCTAAAATCATCTCTTCAGAGACTGGTGAGAATTTAGGTATGGGTGAAAA
GGGTGAAATCTGTATTAAAGGTCCAAATGTTATGTTGGGTTATTATAACAATGAAAGGCA
ACCAATGAAGTCATAGATAAAGATGGATTCTTAAAAACTGGTGATATTGGTTATGTTGAT
GAAGATGGTTATTTCTTTATCATCGATAGATCAAAGGAATTGATCAAATGTAAAGGTTTC
CAAGTACCACCTGCTGAATTAGAAGCATTACTATTATCTCATCCAAAAGTTGCAGATGCC
TGTGTAGTAGGTCTTTCAAAAGGTGATATGGGTGAAGTACCAAGAGGTTTCGTTGTTATT
AAACAAAATGAATCTCTTACTGAAAAAGAACTCTTGGATTGGGCTCACCCAAAAATTGCA
AATTATAAACATTTCAGAGGTGGTATCTTTTTCATACCTGCAATTCCTAAATCTGCAACT
GGTAAACTATTACGTAAAAATCTTAAAGATTTTAATAATCTAAAATTATAAAATTTTAAA
AAAAGGTGTTAATTTTCCACTTTGACCAACAAGATTTTTCAAATTAATTTATTTATATAA
TGTAGGAAACCAAAATGCCAACAAATAAAATTTTAAGATATATCATAAAAAAAAAAAAAA
A
Length of 3' end seq. 651
Connected seq. ID SSI661P
Connected seq.
>SSI661P.Seq
ATAAATGAAGAAAGGTATACAAAAAAAAACACCTTTTATCGATAAAAGCCAAATACTAAA
TAAAATTAATTAATGTGGCGTAACATAAAATTAATTAAAACAAACAAATTAATATACTTT
ATTATTTTTTTTTTTTACGAGGCAAAAAATAAATAATTATTATTTTTAACTTTTTTTTTT
AAACACCATACCATTTTTTAAAAAATAAATAATTATTATTTTTAACTTTTTTTTTATTAT
TTCTTTGTTTTCCAAAATTCTCCTAATTTAAGTTTCGCCATTGTTTATTAAAAAAAAAAA
AAAAAAATTTCTAGGATGATTAGAATAATTAATGGACAAACTTATTTCGCATCAAAATAC
CCAAATATTATAATACCAGAGAAACTAATACCTCAATTAATTTTAAAACATATTAGATCT
AAACCTGATCAAGTTTTATTAGTTGATGGTTTAACTTTTAAAGAATATTCTTCTCATTTT
GTCGCTGATACAATTGAAAAGCATAAACACAATACCATTTTAAAAAAAAAATTAAAAATT
TAAGGATGATTAGAATAATTAATGGACAAACTTATTTCACATCAAAATACCCAAATATTA
TAATACCAG----------GCTAAAATCATCTCTTCAGAGACTGGTGAGAATTTAGGTAT
GGGTGAAAAGGGTGAAATCTGTATTAAAGGTCCAAATGTTATGTTGGGTTATTATAACAA
TGAAAGGCAACCAATGAAGTCATAGATAAAGATGGATTCTTAAAAACTGGTGATATTGGT
TATGTTGATGAAGATGGTTATTTCTTTATCATCGATAGATCAAAGGAATTGATCAAATGT
AAAGGTTTCCAAGTACCACCTGCTGAATTAGAAGCATTACTATTATCTCATCCAAAAGTT
GCAGATGCCTGTGTAGTAGGTCTTTCAAAAGGTGATATGGGTGAAGTACCAAGAGGTTTC
GTTGTTATTAAACAAAATGAATCTCTTACTGAAAAAGAACTCTTGGATTGGGCTCACCCA
AAAATTGCAAATTATAAACATTTCAGAGGTGGTATCTTTTTCATACCTGCAATTCCTAAA
TCTGCAACTGGTAAACTATTACGTAAAAATCTTAAAGATTTTAATAATCTAAAATTATAA
AATTTTAAAAAAAGGTGTTAATTTTCCACTTTGACCAACAAGATTTTTCAAATTAATTTA
TTTATATAATGTAGGAAACCAAAATGCCAACAAATAAAATTTTAAGATATATCATAAAAA
AAAAAAAAAA
Length of connected seq. 1260
Full length Seq ID -
Full length Seq. -
Length of full length seq. -