>SSI660 (SSI660Q) /CSM/SS/SSI6-C/SSI660Q.Seq.d/
XXXXXXXXXXAAAAATAATAAATAAAAAATAAAGATGAGAAAAACTATAATGAAATATTT
ACCAGCTTTAGCAGGTATAATATTTACAGCAGGATGGTTTTTATGGATAGATGGACATGT
TTATGAAAATACAAATAATAAAAATGCAGATTTTGATGGACCACATATTCAATGGATTTA
TTATTTACCAGGTATTTTTGCAACTCTTGGTATGGTTATGGCAAATATTGTAGATTTATC
AGCATTAAATTCAAATTCACTTTTATTTGATGGTGGTGCCACTAAAGTTCGTGTATGGTT
ATTTATTAGTTTTGCAATTAGTTTTGGTTGTATTGGTGCTGCATTATGGATTATGGTTGC
TGTTTTCTTACCACCTCATAATACAAATGACGCTGCTCAATGGCCTGGTATTGCAATCAC
TTTACAAACTTCTTTAATATTTTTAAGTTCACTTCTTTTAGTTTTTAAGAAAGTACGTCA
AGATGATGAATATGACCAATTTTAAAATAATAATGTGTGTTGTTTTTTAAAAAAAAAATA
AAAAAAAAATAAATAAATAATTGTAAAGAATAT

---nnk*KIKMRKTIMKYLPALAGIIFTAGWFLWIDGHVYENTNNKNADFDGPHIQWIYY
LPGIFATLGMVMANIVDLSALNSNSLLFDGGATKVRVWLFISFAISFGCIGAALWIMVAV
FLPPHNTNDAAQWPGIAITLQTSLIFLSSLLLVFKKVRQDDEYDQF*nnnvccflkkk*k
knk*iivkn

Frame A:
---kiinkk*r*ekl**niyql*qv*ylqqdgfyg*mdmfmkiqiikmqilmdhifngfi
iyqvflqllvwlwqil*iyqh*iqihfylmvvplkfvygyllvlqlvlvvlvlhyglwll
fsyhliiqmtllnglvlqslykll*yf*vhff*flrkyvkmmnmtnfkiimcvvf*kknk
kkink*l*ri


Frame B:
---k**iknkdeknyneiftsfsryniysrmvfmdrwtcl*kyk**kcrf*wttysmdll
ftryfcnswygygkycrfisikfkftfi*wwch*sscmviy*fcn*fwlywccimdygcc
fltts*yk*rcsmawycnhftnffnifkftsfsf*estsr**i*pilk**cvlffkkkik
kk*innckey


Frame C:
---nnk*KIKMRKTIMKYLPALAGIIFTAGWFLWIDGHVYENTNNKNADFDGPHIQWIYY
LPGIFATLGMVMANIVDLSALNSNSLLFDGGATKVRVWLFISFAISFGCIGAALWIMVAV
FLPPHNTNDAAQWPGIAITLQTSLIFLSSLLLVFKKVRQDDEYDQF*nnnvccflkkk*k
knk*iivkn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ451 (SSJ451Q) /CSM/SS/SSJ4-C/SSJ451Q.Seq.d/                        934   0.0
SSI660 (SSI660Q) /CSM/SS/SSI6-C/SSI660Q.Seq.d/                        934   0.0
SSI630 (SSI630Q) /CSM/SS/SSI6-B/SSI630Q.Seq.d/                        934   0.0
VSD140 (VSD140Q) /CSM/VS/VSD1-B/VSD140Q.Seq.d/                        920   0.0
SSK193 (SSK193Q) /CSM/SS/SSK1-D/SSK193Q.Seq.d/                        751   0.0
SSH759 (SSH759Q) /CSM/SS/SSH7-C/SSH759Q.Seq.d/                        476   e-133
SSB474 (SSB474Q) /CSM/SS/SSB4-D/SSB474Q.Seq.d/                        151   1e-35
CFE461 (CFE461Q) /CSM/CF/CFE4-C/CFE461Q.Seq.d/                         40   0.036
VHN873 (VHN873Q) /CSM/VH/VHN8-D/VHN873Q.Seq.d/                         38   0.14
SSI624 (SSI624Q) /CSM/SS/SSI6-A/SSI624Q.Seq.d/                         38   0.14

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    38  0.074  8
AY016011|AY016011.1 Casuarius casuarius mitochondrion, partial genome.    42  0.097  3
BH606944|BH606944.1 BOGWX46TF BOGW Brassica oleracea genomic clone BOGWX46, DNA sequence.    32  0.11  3
AE015936|AE015936.1 Clostridium tetani E88, section 1 of 10 of the complete genome.    38  0.15  8
AF338713|AF338713.1 Casuarius casuarius mitochondrion, partial genome.    42  0.17  3
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome.    44  0.18  5
BH730216|BH730216.1 BOMLG92TF BO_2_3_KB Brassica oleracea genomic clone BOMLG92, DNA sequence.    38  0.30  2
AC009391|AC009391.15 Drosophila melanogaster, chromosome 3R, region 100F-100F, BAC clone BACR21I23, complete sequence.    36  0.30  4
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    38  0.31  7
AC015333|AC015333.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    36  0.33  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54T60) RecName: Full=Transmembrane protein 50 homolog;              265   5e-70
BT051238_1(BT051238|pid:none) Medicago truncatula clone MTYF1_F2...    67   4e-10
EU961076_1(EU961076|pid:none) Zea mays clone 232610 transmembran...    66   6e-10
EU958057_1(EU958057|pid:none) Zea mays clone 1670731 transmembra...    65   1e-09
AM437262_1(AM437262|pid:none) Vitis vinifera contig VV78X010791....    64   3e-09
AY050785_1(AY050785|pid:none) Arabidopsis thaliana unknown prote...    63   6e-09
EF082106_1(EF082106|pid:none) Picea sitchensis clone WS0285_N14 ...    62   1e-08
BT075113_1(BT075113|pid:none) Osmerus mordax clone omor-eva-514-...    60   3e-08
EU974353_1(EU974353|pid:none) Zea mays clone 446914 salt toleran...    60   4e-08
DQ214010_1(DQ214010|pid:none) Taeniopygia guttata clone 0063P003...    60   4e-08

 psg: 0.95  gvh: 0.64  alm: 0.25  top: 0.03  tms: 0.20  mit: 0.34  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 28.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSI660 is end

>SSI660Z.Seq
----------AAAAATAATAAATAAAAAATAAAGATGAGAAAAACTATAATGAAATATTT
ACCAGCTTTAGCAGGTATAATATTTACAGCAGGATGGTTTTTATGGATAGATGGACATGT
TTATGAAAATACAAATAATAAAAATGCAGATTTTGATGGACCACATATTCAATGGATTTA
TTATTTACCAGGTATTTTTGCAACTCTTGGTATGGTTATGGCAAATATTGTAGATTTATC
AGCATTAAATTCAAATTCACTTTTATTTGATGGTGGTGCCACTAAAGTTCGTGTATGGTT
ATTTATTAGTTTTGCAATTAGTTTTGGTTGTATTGGTGCTGCATTATGGATTATGGTTGC
TGTTTTCTTACCACCTCATAATACAAATGACGCTGCTCAATGGCCTGGTATTGCAATCAC
TTTACAAACTTCTTTAATATTTTTAAGTTCACTTCTTTTAGTTTTTAAGAAAGTACGTCA
AGATGATGAATATGACCAATTTTAAAATAATAATGTGTGTTGTTTTTTAAAAAAAAAATA
AAAAAAAAATAAATAAATAATTGTAAAGAATAT