>SSI655 (SSI655Q) /CSM/SS/SSI6-C/SSI655Q.Seq.d/
AAAAATTATTACAAACAAATATTTACCAAACAATGAATCCAAAAGATAAAAGAGTTAATT
TTGGTTCTATGGAACCTTTAATAAGAGATATTGGTACAGTTTATGAATTTTATTTTGATC
AAAATACATTTATAGAATCAGAAATAAAAACATTTTTAAAAGAATTTGAAACAAAGAGAG
GAGATAGAGATTTATATTCACTTTCACAACAAACCATAAATGCAAATAATACAATTGTAA
ATATAAATAGATCAATTCATCAATCAAGTCAATTCCTTGAAAATATTAATAATAATTTAA
ATCAAATAAATTCAAAGTTATCAACTCAAGTTGAAAATGAATCAATTCATCAAGAACAAA
GAAATAATGATAGATTAAATAAATTTGAATTGGAATTAGTTGAAAAGAAATCAATTGAAG
ATTCATTCAATCAAAGAAAATCACAAATTGAAAATGATTTCAATGAAAAAGCATCAGTCC
TACGTGACAAATATCAAATTGTATTATAAATXXXXXXXXXX

KLLQTNIYQTMNPKDKRVNFGSMEPLIRDIGTVYEFYFDQNTFIESEIKTFLKEFETKRG
DRDLYSLSQQTINANNTIVNINRSIHQSSQFLENINNNLNQINSKLSTQVENESIHQEQR
NNDRLNKFELELVEKKSIEDSFNQRKSQIENDFNEKASVLRDKYQIVL*---

Frame A:
knyykqiftkq*iqkikelilvlwnl**eilvqfmnfilikihl*nqk*khf*knlkqre
eieiyihfhnkp*mqiiql*i*idqfinqvnslkiliii*ik*iqsyqlklkmnqfiknk
eimid*inlnwn*lkrnqlkihsikenhklkmismkkhqsyvtniklyyk---


Frame B:
kiitnkylpnneskr*ks*fwfygtfnkrywysl*ilf*skyiyrirnknifkri*nker
r*rfiftfttnhkck*ynckyk*inssiksip*ky***fksnkfkvinss*k*inssrtk
k***ik*i*igis*kein*rfiqskkitn*k*fq*ksispt*qisncii---


Frame C:
KLLQTNIYQTMNPKDKRVNFGSMEPLIRDIGTVYEFYFDQNTFIESEIKTFLKEFETKRG
DRDLYSLSQQTINANNTIVNINRSIHQSSQFLENINNNLNQINSKLSTQVENESIHQEQR
NNDRLNKFELELVEKKSIEDSFNQRKSQIENDFNEKASVLRDKYQIVL*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI655 (SSI655Q) /CSM/SS/SSI6-C/SSI655Q.Seq.d/                       1013   0.0
VHP772 (VHP772Q) /CSM/VH/VHP7-C/VHP772Q.Seq.d/                         42   0.008
VSK436 (VSK436Q) /CSM/VS/VSK4-B/VSK436Q.Seq.d/                         40   0.033
VSK386 (VSK386Q) /CSM/VS/VSK3-D/VSK386Q.Seq.d/                         40   0.033
VSJ783 (VSJ783Q) /CSM/VS/VSJ7-D/VSJ783Q.Seq.d/                         40   0.033
VSG266 (VSG266Q) /CSM/VS/VSG2-C/VSG266Q.Seq.d/                         40   0.033
VSF867 (VSF867Q) /CSM/VS/VSF8-C/VSF867Q.Seq.d/                         40   0.033
VSE842 (VSE842Q) /CSM/VS/VSE8-B/VSE842Q.Seq.d/                         40   0.033
VSE125 (VSE125Q) /CSM/VS/VSE1-B/VSE125Q.Seq.d/                         40   0.033
VSB838 (VSB838Q) /CSM/VS/VSB8-B/VSB838Q.Seq.d/                         40   0.033

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115594|AC115594.2 Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence.    36  2e-07  8
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    46  9e-07  8
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38  9e-06  12
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    42  8e-05  9
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    42  9e-05  10
AF083031|AF083031.2 Guillardia theta nucleomorph chromosome 3, complete sequence.    46  2e-04  8
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34  2e-04  11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    32  3e-04  12
AC109140|AC109140.4 Mus musculus clone RP23-153N23, WORKING DRAFT SEQUENCE, 1 ordered piece.    40  8e-04  5
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    44  0.001  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54TC6) RecName: Full=Protein Muted homolog;                         261   7e-69
(Q5ZK77) RecName: Full=Protein Muted homolog;  &AJ720207_1(AJ720...    46   5e-04
(A1L3H4) RecName: Full=Protein Muted homolog;  &BC130100_1(BC130...    44   0.002
(Q8R015) RecName: Full=Protein Muted;  &AF426433_1(AF426433|pid:...    40   0.034
(Q8TDH9) RecName: Full=Protein Muted homolog;  &AF426434_1(AF426...    40   0.045
BC032438_1(BC032438|pid:none) Homo sapiens muted homolog (mouse)...    40   0.045
BC166529_1(BC166529|pid:none) Rattus norvegicus muted, mRNA (cDN...    40   0.045
BT081763_1(BT081763|pid:none) Rana catesbeiana clone rcat-evr-50...    39   0.100
(A5A777) Protein Muted homolog.  &AB271947_1(AB271947|pid:none)        38   0.13
BC153651_1(BC153651|pid:none) Danio rerio zgc:113385, mRNA (cDNA...    37   0.29

 psg: 0.71  gvh: 0.32  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSI655 is nuc

>SSI655F.Seq
AAAAATTATTACAAACAAATATTTACCAAACAATGAATCCAAAAGATAAAAGAGTTAATT
TTGGTTCTATGGAACCTTTAATAAGAGATATTGGTACAGTTTATGAATTTTATTTTGATC
AAAATACATTTATAGAATCAGAAATAAAAACATTTTTAAAAGAATTTGAAACAAAGAGAG
GAGATAGAGATTTATATTCACTTTCACAACAAACCATAAATGCAAATAATACAATTGTAA
ATATAAATAGATCAATTCATCAATCAAGTCAATTCCTTGAAAATATTAATAATAATTTAA
ATCAAATAAATTCAAAGTTATCAACTCAAGTTGAAAATGAATCAATTCATCAAGAACAAA
GAAATAATGATAGATTAAATAAATTTGAATTGGAATTAGTTGAAAAGAAATCAATTGAAG
ATTCATTCAATCAAAGAAAATCACAAATTGAAAATGATTTCAATGAAAAAGCATCAGTCC
TACGTGACAAATATCAAATTGTATTATAAAT----------