SSI647
Library SS
(Link to library)
Clone ID SSI647
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16709-1
Original site URL
Representative seq. ID SSI647F
(Link to Original site)
Representative DNA sequence
>SSI647 (SSI647Q) /CSM/SS/SSI6-B/SSI647Q.Seq.d/
CATTTTCCATCATCAATTAAATATATTATGGGTAATGAAATTTGTGAAAGGTATTCATAC
TATGCTTTAAGAGGTATTTTAACAAATTATTTAATCAGTTTCATGGGATATTCTGAAAAA
AATGCTTCTTCAATTGGTCACGGTTTTAATGCTGGTGCTTATATTTTTTCACTTGTTGGT
GCTTATGTTGCTGATGGTGTTTTAGGAAAATACAAAACAATTTTATATTTCAGTATTTTA
TATTGTTTTGGAGCTGCTTTTTTTTCAATTACTGCAATTCCAGGAATTACTGGTGACAGT
CCAGGTGAAAGATCACCATGGGGTTTAATTGTTGGTTTAACTTGTATTGCAATTGGTACA
GGTGGTATTAAACCAGTTGTAAGTTCATTTTGTGGTGATCAATTTGGTCCACATCAAAAG
AAATTACTTCAAAATCCNTTCCAAGTATTTTATTGGTGTGTAAATTTAGGATCATTCTTT
TCATCAATTCTTTCACCAATTTTAAGAACTAATGTTGGTTATTGGTGTGCATTTGTAATT
CCAGCTGGTATATTAATTATTTCAATTTTAATTTATTTAGTTGGTAATAAACAATATGTT
AAACGTAAACCACAAGGATCCGTTTTATCAACTGCATTCTGTATCGTTGGTACCGGTATC
TCTGAAAGTGTAAAGAAAACATTCCGTGXXXXXXXXXX
sequence update 1998.11.12
Translated Amino Acid sequence
HFPSSIKYIMGNEICERYSYYALRGILTNYLISFMGYSEKNASSIGHGFNAGAYIFSLVG
AYVADGVLGKYKTILYFSILYCFGAAFFSITAIPGITGDSPGERSPWGLIVGLTCIAIGT
GGIKPVVSSFCGDQFGPHQKKLLQNPFQVFYWCVNLGSFFSSILSPILRTNVGYWCAFVI
PAGILIISILIYLVGNKQYVKRKPQGSVLSTAFCIVGTGISESVKKTFR---


Translated Amino Acid sequence (All Frames)
Frame A:
HFPSSIKYIMGNEICERYSYYALRGILTNYLISFMGYSEKNASSIGHGFNAGAYIFSLVG
AYVADGVLGKYKTILYFSILYCFGAAFFSITAIPGITGDSPGERSPWGLIVGLTCIAIGT
GGIKPVVSSFCGDQFGPHQKKLLQNPFQVFYWCVNLGSFFSSILSPILRTNVGYWCAFVI
PAGILIISILIYLVGNKQYVKRKPQGSVLSTAFCIVGTGISESVKKTFR---


Frame B:
ifhhqlnilwvmkfvkgihtml*evf*qii*svswdilkkmllqlvtvlmlvliffhllv
lmllmvf*entkqfyisvfyivlellffqllqfqellvtvqvkdhhgv*llv*lvlqlvq
vvlnql*vhfvvinlvhikrnyfkixskyfigv*i*dhsfhqffhqf*elmlvigvhl*f
qlvy*lfqf*fi*lvinnmlnvnhkdpfyqlhsvslvpvslkv*rkhs---


Frame C:
fsiin*iyyg**nl*kvfilcfkryfnklfnqfhgif*kkcffnwsrf*cwclyfftcwc
lcc*wcfrkiqnnfifqyfilfwscfffnycnsrnyw*qsr*kitmgfncwfnlycnwyr
wy*tsckfilw*siwstskeitsksxpsillvckfriilfinsftnfkn*cwllvcicns
swyinyfnfnlfsw**tic*t*ttrirfincilyrwyryl*kckenip---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI647 (SSI647Q) /CSM/SS/SSI6-B/SSI647Q.Seq.d/ 1269 0.0
AFL660 (AFL660Q) /CSM/AF/AFL6-C/AFL660Q.Seq.d/ 1152 0.0
VFJ818 (VFJ818Q) /CSM/VF/VFJ8-A/VFJ818Q.Seq.d/ 1112 0.0
AFI836 (AFI836Q) /CSM/AF/AFI8-B/AFI836Q.Seq.d/ 1063 0.0
CFI809 (CFI809Q) /CSM/CF/CFI8-A/CFI809Q.Seq.d/ 1061 0.0
CFI512 (CFI512Q) /CSM/CF/CFI5-A/CFI512Q.Seq.d/ 1059 0.0
AFM445 (AFM445Q) /CSM/AF/AFM4-B/AFM445Q.Seq.d/ 1057 0.0
SFF215 (SFF215Q) /CSM/SF/SFF2-A/SFF215Q.Seq.d/ 1051 0.0
AFH234 (AFH234Q) /CSM/AF/AFH2-B/AFH234Q.Seq.d/ 1049 0.0
VFD441 (VFD441Q) /CSM/VF/VFD4-B/VFD441Q.Seq.d/ 1027 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 714 0.0 5
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 103 2e-49 10
AC092982|AC092982.3 Homo sapiens 3q BAC RP11-758I14 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 36 0.053 5
AQ458114|AQ458114.1 HS_5193_A1_H10_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=769 Col=19 Row=O, DNA sequence. 48 0.15 1
BZ003924|BZ003924.1 oem73a03.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 40 0.15 2
AL450063|AL450063.14 Human DNA sequence from clone RP11-82H13 on chromosome 1. 36 0.51 5
AL161546|AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46. 38 0.52 8
AC104335|AC104335.2 Homo sapiens chromosome 1 clone RP11-433K2, complete sequence. 46 0.53 2
AC115465|AC115465.3 Rattus norvegicus clone CH230-192N17, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 46 0.58 1
B89655|B89655.1 CIT-HSP-2171F8.TR CIT-HSP Homo sapiens genomic clone 2171F8, genomic survey sequence. 46 0.58 1
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115680_27(AC115680|pid:none) Dictyostelium discoideum chromoso... 444 e-123
CP000769_400(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co... 159 8e-38
BT031310_1(BT031310|pid:none) Drosophila melanogaster GH01855 fu... 157 2e-37
AE014298_589(AE014298|pid:none) Drosophila melanogaster chromoso... 157 2e-37
AE014298_588(AE014298|pid:none) Drosophila melanogaster chromoso... 157 2e-37
(Q95TX0) RecName: Full=Oligopeptide transporter 1; AltName: Full... 157 2e-37
CP000444_4001(CP000444|pid:none) Shewanella sp. MR-7, complete g... 155 8e-37
CP000469_4(CP000469|pid:none) Shewanella sp. ANA-3, complete gen... 155 8e-37
CP000113_2541(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 154 2e-36
(P51574) RecName: Full=Solute carrier family 15 member 1; AltNam... 154 2e-36
protein update 2009. 6.13
PSORT

psg: 0.74 gvh: 0.42 alm: 0.17 top: 0.40 tms: 0.20 mit: 0.18 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

48.0 %: endoplasmic reticulum
16.0 %: plasma membrane
12.0 %: mitochondrial
8.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: cytoplasmic

>> prediction for SSI647 is end

5' end seq. ID SSI647F
5' end seq.
>SSI647F.Seq
CATTTTCCATCATCAATTAAATATATTATGGGTAATGAAATTTGTGAAAGGTATTCATAC
TATGCTTTAAGAGGTATTTTAACAAATTATTTAATCAGTTTCATGGGATATTCTGAAAAA
AATGCTTCTTCAATTGGTCACGGTTTTAATGCTGGTGCTTATATTTTTTCACTTGTTGGT
GCTTATGTTGCTGATGGTGTTTTAGGAAAATACAAAACAATTTTATATTTCAGTATTTTA
TATTGTTTTGGAGCTGCTTTTTTTTCAATTACTGCAATTCCAGGAATTACTGGTGACAGT
CCAGGTGAAAGATCACCATGGGGTTTAATTGTTGGTTTAACTTGTATTGCAATTGGTACA
GGTGGTATTAAACCAGTTGTAAGTTCATTTTGTGGTGATCAATTTGGTCCACATCAAAAG
AAATTACTTCAAAATCCNTTCCAAGTATTTTATTGGTGTGTAAATTTAGGATCATTCTTT
TCATCAATTCTTTCACCAATTTTAAGAACTAATGTTGGTTATTGGTGTGCATTTGTAATT
CCAGCTGGTATATTAATTATTTCAATTTTAATTTATTTAGTTGGTAATAAACAATATGTT
AAACGTAAACCACAAGGATCCGTTTTATCAACTGCATTCTGTATCGTTGGTACCGGTATC
TCTGAAAGTGTAAAGAAAACATTCCGTG----------
Length of 5' end seq. 688
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -