NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI645
Library SS
(Link to library)
Clone ID SSI645
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05474-1
Original site URL
Representative seq. ID SSI645E
(Link to Original site)
Representative DNA sequence 
>SSI645 (SSI645Q) /CSM/SS/SSI6-B/SSI645Q.Seq.d/
CTGATAAAGCTGATAAAATTAAAATATTATTTAAAGTATATGATATTAATAATGATGGGT
TCATAACAAGAGATGAAATTGAAACCATTTTAACAATGATGGTTGGTTCAAATTTAACAA
AAGAACAAATTTCAAGTATTGTTGAGGAAACTCTCAATGAAGCTGATGTAAATGGTAAAG
GGAAATTAGACTATCCAGATTTCTATAATTCAATCGGATCATCAGGTTGTAATGCCGAAA
ATATGCTTTCCATTTCTTTTAATCCTTTTGAATAAGAAAATAATGAATAATATGTGTAAA
TAAAATGAAACTAAACAAATGAAACAAAGATTGATGAGAATAATTCAGTGTGGAAAAATA
AAATAAAAAATTAGTATAATAAATATAAAAAAAAAAAAAAAA
sequence update 1998. 1.11
Translated Amino Acid sequence 
DKADKIKILFKVYDINNDGFITRDEIETILTMMVGSNLTKEQISSIVEETLNEADVNGKG
KLDYPDFYNSIGSSGCNAENMLSISFNPFE*enne*yv*ik*n*tnetkidennsvwknk
ikn*ynkykkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
likliklkyylkymilimmgs*qemklkpf*q*wlvqi*qknkfqvllrklsmklm*mvk
gn*tiqisiiqsdhqvvmpkicfpfllillnkkimnnmck*netkqmkqrlmriiqcgki
k*kisiinikkkkk


Frame B:
**s**n*nii*si*y***wvhnkr*n*nhfnndgwfkfnkrtnfkyc*gnsq*s*ckw*r
eirlsrfl*fnriirl*crkyafhff*sf*irk**iicvnkmklnk*nkd**e*fsvek*
nkklv**i*kkkk


Frame C:
DKADKIKILFKVYDINNDGFITRDEIETILTMMVGSNLTKEQISSIVEETLNEADVNGKG
KLDYPDFYNSIGSSGCNAENMLSISFNPFE*enne*yv*ik*n*tnetkidennsvwknk
ikn*ynkykkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI645 (SSI645Q) /CSM/SS/SSI6-B/SSI645Q.Seq.d/                        700   0.0
VSK154 (VSK154Q) /CSM/VS/VSK1-C/VSK154Q.Seq.d/                         46   4e-04
VSJ633 (VSJ633Q) /CSM/VS/VSJ6-B/VSJ633Q.Seq.d/                         46   4e-04
VSI567 (VSI567Q) /CSM/VS/VSI5-C/VSI567Q.Seq.d/                         46   4e-04
VSI476 (VSI476Q) /CSM/VS/VSI4-D/VSI476Q.Seq.d/                         46   4e-04
VSH391 (VSH391Q) /CSM/VS/VSH3-D/VSH391Q.Seq.d/                         46   4e-04
VSE466 (VSE466Q) /CSM/VS/VSE4-C/VSE466Q.Seq.d/                         46   4e-04
VSA751 (VSA751Q) /CSM/VS/VSA7-C/VSA751Q.Seq.d/                         46   4e-04
VFD211 (VFD211Q) /CSM/VF/VFD2-A/VFD211Q.Seq.d/                         46   4e-04
SSF559 (SSF559Q) /CSM/SS/SSF5-C/SSF559Q.Seq.d/                         46   4e-04
own update 2001. 6.15
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE017013|AE017013.1 Bacillus cereus ATCC 14579 section 16 of 18 of the complete genome.    44  0.015  8
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36  0.036  12
AE017039|AE017039.1 Bacillus anthracis str. Ames section 16 of 18 of the complete genome.    42  0.038  8
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    34  0.045  12
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          36  0.059  11
AC017247|AC017247.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    36  0.078  4
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    34  0.080  11
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.    38  0.11  12
AE002152|AE002152.1 Ureaplasma urealyticum section 53 of 59 of the complete genome.    38  0.12  3
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          36  0.15  9
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MF3) RecName: Full=Calcineurin subunit B type 2; AltName: Fu...   180   2e-44
CP000496_1005(CP000496|pid:none) Pichia stipitis CBS 6054 chromo...    76   3e-13
BT077971_1(BT077971|pid:none) Lepeophtheirus salmonis Pacific fo...    75   5e-13
(Q6BWS8) RecName: Full=Calcineurin subunit B; AltName: Full=Prot...    74   1e-12
EZ048865_1(EZ048865|pid:none) TSA: Stomoxys calcitrans SC-4-4-2 ...    74   2e-12
(P42322) RecName: Full=Calcineurin subunit B; AltName: Full=Prot...    74   2e-12
AY069465_1(AY069465|pid:none) Drosophila melanogaster LD19356 fu...    73   3e-12
(Q757B7) RecName: Full=Calcineurin subunit B; AltName: Full=Prot...    73   3e-12
AE014297_317(AE014297|pid:none) Drosophila melanogaster chromoso...    73   3e-12
AM270333_12(AM270333|pid:none) Aspergillus niger contig An15c006...    72   5e-12
protein update 2009. 7. 8
PSORT 

 psg: 0.53  gvh: 0.31  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI645 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSI645E
Full length Seq. 
>SSI645E.Seq
CTGATAAAGCTGATAAAATTAAAATATTATTTAAAGTATATGATATTAATAATGATGGGT
TCATAACAAGAGATGAAATTGAAACCATTTTAACAATGATGGTTGGTTCAAATTTAACAA
AAGAACAAATTTCAAGTATTGTTGAGGAAACTCTCAATGAAGCTGATGTAAATGGTAAAG
GGAAATTAGACTATCCAGATTTCTATAATTCAATCGGATCATCAGGTTGTAATGCCGAAA
ATATGCTTTCCATTTCTTTTAATCCTTTTGAATAAGAAAATAATGAATAATATGTGTAAA
TAAAATGAAACTAAACAAATGAAACAAAGATTGATGAGAATAATTCAGTGTGGAAAAATA
AAATAAAAAATTAGTATAATAAATATAAAAAAAAAAAAAAAA
Length of full length seq. 402