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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI637
Library SS
(Link to library)
Clone ID SSI637
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16581-1
Original site URL
Representative seq. ID SSI637Z
(Link to Original site)
Representative DNA sequence 
>SSI637 (SSI637Q) /CSM/SS/SSI6-B/SSI637Q.Seq.d/
XXXXXXXXXXAATAAAGGAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAA
AAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAACTT
TTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTC
CCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGATGC
TCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAA
GCAGTCTTTAACAAAAAAAAATATTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTA
AAATATTTTTTTTAAAATCAATTTTAAATATAAAA
sequence update 1998. 1.11
Translated Amino Acid sequence 
---kgk***aipwdlekikkfkkkiknnkk*kknkkknf*nspstfwcfc*ANAKVSLSP
FALHYSPQAQIISSSTNDAPQVSSGLIHHIPMQLSQMYKQSLTKKNI*kkkkkkkkky*n
iffkinfkyk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ikennnklyhgt*rk*kslkkk*kiiknkkkikkktfktllllfgasvklmlrclsp
pllcitllklr*srapltmllkypqg*sitflcnslkcissl*qkkifkkkkkrkkknik
ifflksilnik


Frame B:
---*rkiiisytmglrenkkv*kknkk**kikkk*kkkllklsfyflvllls*c*gvslp
lcfallssssdnlelh*rcsssilrvnpshsyatlsnv*avfnkkkylkkkkkekkkilk
yff*nqf*i*


Frame C:
---kgk***aipwdlekikkfkkkiknnkk*kknkkknf*nspstfwcfc*ANAKVSLSP
FALHYSPQAQIISSSTNDAPQVSSGLIHHIPMQLSQMYKQSLTKKNI*kkkkkkkkky*n
iffkinfkyk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        387   e-107
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        387   e-107
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        387   e-107
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        387   e-107
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        387   e-107
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        387   e-107
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        387   e-107
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        387   e-107
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        387   e-107
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/                        387   e-107
own update 2004. 8.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   387  e-122  3
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50  0.020  1
BM094544|BM094544.1 saj17c12.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-2832 5', mRNA sequence.    44  1.3  1
AL121768|AL121768.4 Human chromosome 14 DNA sequence BAC R-976B16 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    40  2.3  2
AC093987|AC093987.6 Rattus norvegicus clone CH230-36D18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  5.0  1
AC144058|AC144058.1 Macaca mulatta clone CH250-270I18, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42  5.0  1
AC113975|AC113975.4 Mus musculus clone RP23-140P24, WORKING DRAFT SEQUENCE, 5 ordered pieces.    42  5.0  1
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42  5.0  1
AQ943086|AQ943086.1 Sheared DNA-33L4.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-33L4, genomic survey sequence.    42  5.0  1
AQ943113|AQ943113.1 Sheared DNA-33L11.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-33L11, genomic survey sequence.    42  5.0  1
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000654_38(CP000654|pid:none) Enterobacter sp. 638, complete se...    32   8.8
protein update 2009. 2. 1
PSORT 

 psg: 0.90  gvh: 0.38  alm: 0.51  top: 0.37  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SSI637 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI637Z
3' end seq. 
>SSI637Z.Seq
----------AATAAAGGAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAA
AAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAACTT
TTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTC
CCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGATGC
TCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAA
GCAGTCTTTAACAAAAAAAAATATTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTA
AAATATTTTTTTTAAAATCAATTTTAAATATAAAA
Length of 3' end seq. 385
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -