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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI618
Library SS
(Link to library)
Clone ID SSI618
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05470-1
Original site URL
Representative seq. ID SSI618E
(Link to Original site)
Representative DNA sequence 
>SSI618 (SSI618Q) /CSM/SS/SSI6-A/SSI618Q.Seq.d/
TTTAAAATACCAAGTAATGATAGTATAGAATCCGGATTTTATTATCACTGTTTAAAATGT
AATAGTGATAATAAACAAATCAATTGCCCAGACGACTCTTCAAGTGTATTCACTTCTCAA
CATGATCAANGAACTTTTANGAAAATTAATTTATTAATTAACATTNNGCAACAACGTCAT
CAATCAATCGCTACCAATCTACTCAATACAAATAACGAATATCTAATGAAAGGTATGCCT
GATCATATAGTTTATAAAGAGATCACCAATGCTTTAGAACAATCAATGATTTCAAATCCA
TCAAAAGTNTCTGCTGATCAAGTATTTACAAACTCTTTAATTCAATATTATTTTCGTTTA
TTCCAAACTTTAAAAATNGAAAAACCAAATGATACACAACAATTACAATCTGTTAAAACT
AAAATTTTACAATTATTAACNCCAATCATTCATTTACCAACTTCTCATCATAAATCTTCC
ATTGAAAAAAAGTTAAAATTTTAAAAATNGAATAAATAAATTAAATAAATAAATGAATTA
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 6.22
Translated Amino Acid sequence 
FKIPSNDSIESGFYYHCLKCNSDNKQINCPDDSSSVFTSQHDQXTFXKINLLINIXQQRH
QSIATNLLNTNNEYLMKGMPDHIVYKEITNALEQSMISNPSKVSADQVFTNSLIQYYFRL
FQTLKXEKPNDTQQLQSVKTKILQLLTPIIHLPTSHHKSSIEKKLKF*kxnk*ik*inel
ikkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
FKIPSNDSIESGFYYHCLKCNSDNKQINCPDDSSSVFTSQHDQXTFXKINLLINIXQQRH
QSIATNLLNTNNEYLMKGMPDHIVYKEITNALEQSMISNPSKVSADQVFTNSLIQYYFRL
FQTLKXEKPNDTQQLQSVKTKILQLLTPIIHLPTSHHKSSIEKKLKF*kxnk*ik*inel
ikkkkkkkkkkkkkkkk


Frame B:
lkyqvmiv*npdfiitv*nviviinksiaqttlqvysllnmixellxkliy*ltxxnnvi
nqslpiysiqitni**kvclii*fikrspml*nnq*fqihqkxllikylqtl*fniifvy
skl*kxknqmihnnynllklkfyny*xqsfiyqlliinlplkks*nfknxinklnk*mn*
*kkkkkkkkkkkkkkk


Frame C:
*ntk***yririllslfkm*****tnqlprrlfkcihfst*sxnfxen*fin*hxattss
inryqstqyk*risnerya*sysl*rdhqcfrtindfksiksxc*ssiyklfnsilfsfi
pnfknxktk*yttitic*n*nftiinxnhsftnfss*ifh*kkvkilkxe*in*ink*in
kkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI618 (SSI618Q) /CSM/SS/SSI6-A/SSI618Q.Seq.d/                        918   0.0
VHP792 (VHP792Q) /CSM/VH/VHP7-D/VHP792Q.Seq.d/                         38   0.15
VHL231 (VHL231Q) /CSM/VH/VHL2-B/VHL231Q.Seq.d/                         38   0.15
VHK104 (VHK104Q) /CSM/VH/VHK1-A/VHK104Q.Seq.d/                         38   0.15
VHD504 (VHD504Q) /CSM/VH/VHD5-A/VHD504Q.Seq.d/                         38   0.15
VFB735 (VFB735Q) /CSM/VF/VFB7-B/VFB735Q.Seq.d/                         38   0.15
SSM336 (SSM336Q) /CSM/SS/SSM3-B/SSM336Q.Seq.d/                         38   0.15
VSJ661 (VSJ661Q) /CSM/VS/VSJ6-C/VSJ661Q.Seq.d/                         36   0.58
VHA648 (VHA648Q) /CSM/VH/VHA6-B/VHA648Q.Seq.d/                         36   0.58
VFE207 (VFE207Q) /CSM/VF/VFE2-A/VFE207Q.Seq.d/                         36   0.58
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF310894|AF310894.1 Dictyostelium discoideum prespore-specific protein (pspC) gene, partial cds; RacH (racH) gene, complete cds; and BOP (bopA) gene, partial cds.   918  0.0  1
AF104350|AF104350.1 Dictyostelium discoideum prespore-specific protein (pspC) gene, partial cds; and unknown gene.   690  0.0  2
BX324226|BX324226.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-202B10.    48  0.29  3
AC121297|AC121297.3 Mus musculus clone RP23-326H11, WORKING DRAFT SEQUENCE, 13 unordered pieces.    38  0.38  2
AW867499|AW867499.1 MR0-SN0037-160400-004-e11 SN0037 Homo sapiens cDNA, mRNA sequence.    34  0.84  2
AW867407|AW867407.1 MR0-SN0037-070400-003-g09 SN0037 Homo sapiens cDNA, mRNA sequence.    34  0.87  2
CD702407|CD702407.1 EST18932 human nasopharynx Homo sapiens cDNA, mRNA sequence.    34  1.1  2
AC007275|AC007275.4 Homo sapiens BAC clone RP11-109F19 from Y, complete sequence.    42  1.2  2
AU299935|AU299935.1 Cryptomeria japonica mRNA, clone: CF0740, 5' end, expressed in developing female cone.    38  1.3  2
BX510338|BX510338.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-202F5.    48  1.5  4
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF104350_1(AF104350|pid:none) Dictyostelium discoideum prespore-...   312   4e-84
CP001184_493(CP001184|pid:none) Ureaplasma urealyticum serovar 1...    38   0.24
CR382133_548(CR382133|pid:none) Debaryomyces hansenii strain CBS...    37   0.31
AL031745_30(AL031745|pid:none) Plasmodium falciparum DNA from MA...    35   2.0
AL035476_11(AL035476|pid:none) Plasmodium falciparum MAL4P3.  &A...    34   2.6
CP000685_2761(CP000685|pid:none) Flavobacterium johnsoniae UW101...    34   3.5
(Q30KJ8) RecName: Full=Beta-defensin 131; AltName: Full=Defensin...    33   5.9
protein update 2009. 3. 6
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar

>> prediction for SSI618 is nuc
5' end seq. ID SSI618F
5' end seq. 
>SSI618F.Seq
TTTAAAATACCAAGTAATGATAGTATAGAATCCGGATTTTATTATCACTGTTTAAAATGT
AATAGTGATAATAAACAAATCAATTGCCCAGACGACTCTTCAAGTGTATTCACTTCTCAA
CATGATCAAAGAACTTTTAAGAAAATTAATTTATTAATTAACATTATGCAACAACGTCAT
CAATCAATCGCTACCAATCTACTCAATACAAATAACGAATATCTAATGAAAGGTATGCCT
GATCATATAGTTTATAAAGAGATCACCAATGCTTTAGAACAATCAATGATTTCAAATCCA
TCAAAAGTATCTGCTGATCAAGTATTTACAAACTCTTTAATTCAATATTATTTTCGTTTA
TTCCAAACTTTAAAAATAGAAAAACCAAATGATACACAACAATTACAATCTGTTAAAACT
AAAATTTTACAATTATTAACTCCAATCATTCATTTACCAACTTCTCATCATAAATCTTCC
ATTGAAAAAAAGTTAAAATTTTAAAAATAGAATAAATAAATTAAATAAATAAATGAATTA
ATAA----------
Length of 5' end seq. 544
3' end seq. ID SSI618Z
3' end seq. 
>SSI618Z.Seq
----------GTATTCACTTCTCAACATGATCAAGGAACTTTTAGGAAAATTAATTTATT
AATTAACATTTGGCAACAACGTCATCAATCAATCGCTACCAATCTACTCAATACAAATAA
CGAATATCTAATGAAAGGTATGCCTGATCATATAGTTTATAAAGAGATCACCAATGCTTT
AGAACAATCAATGATTTCAAATCCATCAAAAGTCTCTGCTGATCAAGTATTTACAAACTC
TTTAATTCAATATTATTTTCGTTTATTCCAAACTTTAAAAATGGAAAAACCAAATGATAC
ACAACAATTACAATCTGTTAAAACTAAAATTTTACAATTATTAACGCCAATCATTCATTT
ACCAACTTCTCATCATAAATCTTCCATTGAAAAAAAGTTAAAATTTTAAAAATGGAATAA
ATAAATTAAATAAATAAATGAATTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
Length of 3' end seq. 486
Connected seq. ID SSI618P
Connected seq. 
>SSI618P.Seq
TTTAAAATACCAAGTAATGATAGTATAGAATCCGGATTTTATTATCACTGTTTAAAATGT
AATAGTGATAATAAACAAATCAATTGCCCAGACGACTCTTCAAGTGTATTCACTTCTCAA
CATGATCAAAGAACTTTTAAGAAAATTAATTTATTAATTAACATTATGCAACAACGTCAT
CAATCAATCGCTACCAATCTACTCAATACAAATAACGAATATCTAATGAAAGGTATGCCT
GATCATATAGTTTATAAAGAGATCACCAATGCTTTAGAACAATCAATGATTTCAAATCCA
TCAAAAGTATCTGCTGATCAAGTATTTACAAACTCTTTAATTCAATATTATTTTCGTTTA
TTCCAAACTTTAAAAATAGAAAAACCAAATGATACACAACAATTACAATCTGTTAAAACT
AAAATTTTACAATTATTAACTCCAATCATTCATTTACCAACTTCTCATCATAAATCTTCC
ATTGAAAAAAAGTTAAAATTTTAAAAATAGAATAAATAAATTAAATAAATAAATGAATTA
ATAA----------GTATTCACTTCTCAACATGATCAAGGAACTTTTAGGAAAATTAATT
TATTAATTAACATTTGGCAACAACGTCATCAATCAATCGCTACCAATCTACTCAATACAA
ATAACGAATATCTAATGAAAGGTATGCCTGATCATATAGTTTATAAAGAGATCACCAATG
CTTTAGAACAATCAATGATTTCAAATCCATCAAAAGTCTCTGCTGATCAAGTATTTACAA
ACTCTTTAATTCAATATTATTTTCGTTTATTCCAAACTTTAAAAATGGAAAAACCAAATG
ATACACAACAATTACAATCTGTTAAAACTAAAATTTTACAATTATTAACGCCAATCATTC
ATTTACCAACTTCTCATCATAAATCTTCCATTGAAAAAAAGTTAAAATTTTAAAAATGGA
ATAAATAAATTAAATAAATAAATGAATTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1030
Full length Seq ID SSI618E
Full length Seq. 
>SSI618E.Seq
TTTAAAATACCAAGTAATGATAGTATAGAATCCGGATTTTATTATCACTGTTTAAAATGT
AATAGTGATAATAAACAAATCAATTGCCCAGACGACTCTTCAAGTGTATTCACTTCTCAA
CATGATCAANGAACTTTTANGAAAATTAATTTATTAATTAACATTNNGCAACAACGTCAT
CAATCAATCGCTACCAATCTACTCAATACAAATAACGAATATCTAATGAAAGGTATGCCT
GATCATATAGTTTATAAAGAGATCACCAATGCTTTAGAACAATCAATGATTTCAAATCCA
TCAAAAGTNTCTGCTGATCAAGTATTTACAAACTCTTTAATTCAATATTATTTTCGTTTA
TTCCAAACTTTAAAAATNGAAAAACCAAATGATACACAACAATTACAATCTGTTAAAACT
AAAATTTTACAATTATTAACNCCAATCATTCATTTACCAACTTCTCATCATAAATCTTCC
ATTGAAAAAAAGTTAAAATTTTAAAAATNGAATAAATAAATTAAATAAATAAATGAATTA
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 591