SSI617
Library SS
(Link to library)
Clone ID SSI617
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16244-1
Original site URL
Representative seq. ID SSI617F
(Link to Original site)
Representative DNA sequence
>SSI617 (SSI617Q) /CSM/SS/SSI6-A/SSI617Q.Seq.d/
GTTTAAAACTAAAATATCAAGATGCATGTGTTAAATTTATTATTTTTAATAGTAATAATT
AATATTTTAATTTTTTCTGTACAATCATATACCTTGAAAAAGTATGATTATGGTCAGTTT
TTAGTTATGGCCAGTGGGCCAGTAATTAATAAAAAATTTAATGTTGCAAATCACCAGGTA
TCAAACTTTTTACTAACAAAAGATGAAAATGATTCTAATTCAGTGCAGCTTCGTATCACT
TCTGATGGAGCACCAGAATTTTTAATCTTTTACAGTACTTTTAGTGATGAAATTGCAAGT
GAAAAAAATTCAAACAAAACAAATATTACCACTCCATTGGAAGGCTCAATGTGTATCTCT
AGTGTCTATTCTTTTTCAATCAAAATGAACAATTACCTCTTGGGTGGTGATTACATTATC
TCAATTCTAGGTAACTCTGATGTTTCAAAATGCTACAAGCATGTCCCAGTAAACCAAGCT
AACCAAGAACCTGAAAGTATTGTATTACTTTCAACATCTTCTGAACAACTTGTTTTACAA
TCTGATGGTGAAACAGTCGTTCAAAAAAATATAGAGAATCAAAAATCTACTGCTTCAACA
CCACTAGTCAATGGAGTTTTAATTTTTTCAACAGTTCTTTTATTTTTACAXXXXXXXXXX
sequence update 1998.11.12
Translated Amino Acid sequence
v*n*NIKMHVLNLLFLIVIINILIFSVQSYTLKKYDYGQFLVMASGPVINKKFNVANHQV
SNFLLTKDENDSNSVQLRITSDGAPEFLIFYSTFSDEIASEKNSNKTNITTPLEGSMCIS
SVYSFSIKMNNYLLGGDYIISILGNSDVSKCYKHVPVNQANQEPESIVLLSTSSEQLVLQ
SDGETVVQKNIENQKSTASTPLVNGVLIFSTVLLFL---


Translated Amino Acid sequence (All Frames)
Frame A:
v*n*NIKMHVLNLLFLIVIINILIFSVQSYTLKKYDYGQFLVMASGPVINKKFNVANHQV
SNFLLTKDENDSNSVQLRITSDGAPEFLIFYSTFSDEIASEKNSNKTNITTPLEGSMCIS
SVYSFSIKMNNYLLGGDYIISILGNSDVSKCYKHVPVNQANQEPESIVLLSTSSEQLVLQ
SDGETVVQKNIENQKSTASTPLVNGVLIFSTVLLFL---


Frame B:
fktkisrcmc*iyyf****lif*fflynhip*ksmimvsf*lwpvgq*liknlmlqitry
qtfy*qkmkmiliqcsfvsllmehqnf*sftvllvmklqvkkiqtkqilplhwkaqcvsl
vsilfqsk*titswvvitlsqf*vtlmfqnatsmsq*tkltknlkvlyyfqhllnnlfyn
lmvkqsfkki*riknlllqhh*smef*ffqqffyfy---


Frame C:
lklkyqdacvkfiifnsnn*yfnffctiiylekv*lwsvfsygqwasn**ki*cckspgi
klftnkr*k*f*fsaasyhf*wstrifnllqyf***nck*kkfkqnkyyhsigrlnvyl*
clfffnqneqlplgw*lhylnsr*l*cfkmlqacpskps*prt*kycitfnif*ttcfti
*w*nsrskkyreskiycfnttsqwsfnffnssfif---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI617 (SSI617Q) /CSM/SS/SSI6-A/SSI617Q.Seq.d/ 1055 0.0
SSG604 (SSG604Q) /CSM/SS/SSG6-A/SSG604Q.Seq.d/ 1047 0.0
SFJ286 (SFJ286Q) /CSM/SF/SFJ2-D/SFJ286Q.Seq.d/ 1047 0.0
SHG360 (SHG360Q) /CSM/SH/SHG3-C/SHG360Q.Seq.d/ 1041 0.0
CHM774 (CHM774Q) /CSM/CH/CHM7-D/CHM774Q.Seq.d/ 1041 0.0
SSD160 (SSD160Q) /CSM/SS/SSD1-C/SSD160Q.Seq.d/ 1039 0.0
CHK586 (CHK586Q) /CSM/CH/CHK5-D/CHK586Q.Seq.d/ 1035 0.0
CFG164 (CFG164Q) /CSM/CF/CFG1-C/CFG164Q.Seq.d/ 1035 0.0
AHB431 (AHB431Q) /CSM/AH/AHB4-B/AHB431Q.Seq.d/ 1035 0.0
CHS437 (CHS437Q) /CSM/CH/CHS4-B/CHS437Q.Seq.d/ 1029 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC112119|AC112119.6 Rattus norvegicus clone CH230-163B19, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 36 0.26 7
BH947847|BH947847.1 obu93b02.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 36 0.54 2
AX344572|AX344572.1 Sequence 23 from Patent WO0200932. 42 0.89 5
BX510907|BX510907.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-234B6. 36 1.0 6
BX569782|BX569782.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-194H13. 44 1.6 3
BU438831|BU438831.1 604142434F1 CSEQRBN11 Gallus gallus cDNA clone ChEST977c10 5', mRNA sequence. 36 1.8 2
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 32 2.1 8
AC099426|AC099426.7 Rattus norvegicus clone CH230-209O11, WORKING DRAFT SEQUENCE, 6 unordered pieces. 44 2.1 1
BH471876|BH471876.1 BOHAN79TR BOHA Brassica oleracea genomic clone BOHAN79, DNA sequence. 44 2.1 1
BH498349|BH498349.1 BOHFF52TR BOHF Brassica oleracea genomic clone BOHFF52, DNA sequence. 44 2.1 1
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q11121) RecName: Full=Lysophospholipase; EC=3.1.1.5; A... 38 0.30
AP002071_19(AP002071|pid:none) Oryza sativa Japonica Group genom... 37 0.67
AE008384_3094(AE008384|pid:none) Methanosarcina mazei strain Goe... 37 0.67
AM114193_2667(AM114193|pid:none) Uncultured methanogenic archaeo... 35 1.5
AL033502_6(AL033502|pid:none) C.albicans cosmid Ca38F10. 35 1.5
AB1261(AB1261) shikimate 5-dehydrogenase (AroD) homolog lmo1490 ... 35 1.9
CP000851_367(CP000851|pid:none) Shewanella pealeana ATCC 700345,... 35 1.9
AL844506_176(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 35 2.5
CR382126_749(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 34 3.3
CP000685_2192(CP000685|pid:none) Flavobacterium johnsoniae UW101... 34 3.3
protein update 2009. 6.13
PSORT

psg: 1.00 gvh: 0.56 alm: 0.16 top: 0.43 tms: 0.13 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
24.0 %: mitochondrial
16.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear
4.0 %: vesicles of secretory system
4.0 %: cytoplasmic

>> prediction for SSI617 is end

5' end seq. ID SSI617F
5' end seq.
>SSI617F.Seq
GTTTAAAACTAAAATATCAAGATGCATGTGTTAAATTTATTATTTTTAATAGTAATAATT
AATATTTTAATTTTTTCTGTACAATCATATACCTTGAAAAAGTATGATTATGGTCAGTTT
TTAGTTATGGCCAGTGGGCCAGTAATTAATAAAAAATTTAATGTTGCAAATCACCAGGTA
TCAAACTTTTTACTAACAAAAGATGAAAATGATTCTAATTCAGTGCAGCTTCGTATCACT
TCTGATGGAGCACCAGAATTTTTAATCTTTTACAGTACTTTTAGTGATGAAATTGCAAGT
GAAAAAAATTCAAACAAAACAAATATTACCACTCCATTGGAAGGCTCAATGTGTATCTCT
AGTGTCTATTCTTTTTCAATCAAAATGAACAATTACCTCTTGGGTGGTGATTACATTATC
TCAATTCTAGGTAACTCTGATGTTTCAAAATGCTACAAGCATGTCCCAGTAAACCAAGCT
AACCAAGAACCTGAAAGTATTGTATTACTTTCAACATCTTCTGAACAACTTGTTTTACAA
TCTGATGGTGAAACAGTCGTTCAAAAAAATATAGAGAATCAAAAATCTACTGCTTCAACA
CCACTAGTCAATGGAGTTTTAATTTTTTCAACAGTTCTTTTATTTTTACA----------
Length of 5' end seq. 650
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -