>SSI616 (SSI616Q) /CSM/SS/SSI6-A/SSI616Q.Seq.d/
XXXXXXXXXXTGATGAAAATACTTTAATTAAAACCATCGTCAATGATGGTCCAGTAAGTA
TTCGCGTTGAAGCTTCAACATGGCAATCCTATTCTGGTGGCATTATTACAACTGGTTGTG
GTAAAAACATTGATCATTGTGTTCAAGTAGTTGGTTTAGAAGTTGATAAAACTGATCCAT
CAAATCCAGTTCAATATTATATCATTAGAAATTCTTGGGGTACTGATTGGGGTATTGATT
TTTTCATTTACGTAGCTACTGGTTCTGATTTATGTGGTATTACTTATGAATCAACAATGG
TTGATGTATAAATACATTAATTTTCCTCTTCTCTCTCTCTATATTTGTATGATTTCTGTT
GTAAAAAAAAAAAAAAAAAAA

---DENTLIKTIVNDGPVSIRVEASTWQSYSGGIITTGCGKNIDHCVQVVGLEVDKTDPS
NPVQYYIIRNSWGTDWGIDFFIYVATGSDLCGITYESTMVDV*ih*fssslslylydfcc
kkkkkk

Frame A:
---DENTLIKTIVNDGPVSIRVEASTWQSYSGGIITTGCGKNIDHCVQVVGLEVDKTDPS
NPVQYYIIRNSWGTDWGIDFFIYVATGSDLCGITYESTMVDV*ih*fssslslylydfcc
kkkkkk


Frame B:
---mkil*lkpssmmvq*vfalklqhgnpilvallqlvvvktliivfk*lv*kliklihq
iqfniisleilgvligvlifsft*llvliyvvllmnqqwlmykyinfpllslyicmisvv
kkkkkk


Frame C:
---*kyfn*nhrq*wsskysr*sfnmailfwwhyynwlw*kh*slcssswfrs**n*sik
sssilyh*kflgy*lgy*ffhlrsywf*fmwyyl*inng*cintliflfslsifv*fll*
kkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI616 (SSI616Q) /CSM/SS/SSI6-A/SSI616Q.Seq.d/                        698   0.0
SSL745 (SSL745Q) /CSM/SS/SSL7-B/SSL745Q.Seq.d/                        634   0.0
SSK693 (SSK693Q) /CSM/SS/SSK6-D/SSK693Q.Seq.d/                        634   0.0
SSJ874 (SSJ874Q) /CSM/SS/SSJ8-D/SSJ874Q.Seq.d/                        634   0.0
SSI455 (SSI455Q) /CSM/SS/SSI4-C/SSI455Q.Seq.d/                        634   0.0
SSH895 (SSH895Q) /CSM/SS/SSH8-D/SSH895Q.Seq.d/                        634   0.0
SSH864 (SSH864Q) /CSM/SS/SSH8-C/SSH864Q.Seq.d/                        634   0.0
SSH449 (SSH449Q) /CSM/SS/SSH4-C/SSH449Q.Seq.d/                        634   0.0
SSH105 (SSH105Q) /CSM/SS/SSH1-A/SSH105Q.Seq.d/                        634   0.0
SSE774 (SSE774Q) /CSM/SS/SSE7-D/SSE774Q.Seq.d/                        634   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   396  e-168  2
BX547932|BX547932.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-269E10.    42  0.018  4
AC011665|AC011665.8 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence.    46  0.16  5
AC011914|AC011914.9 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence.    46  0.31  1
AV831455|AV831455.1 Arabidopsis thaliana cDNA clone:RAFL09-89-F10, 5'-end.    46  0.31  1
AY156072|AY156072.1 Entamoeba histolytica cysteine protease 14 (CP14) gene, complete cds.    46  0.31  1
AY072161|AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.    46  0.31  1
AZ537802|AZ537802.1 ENTEG63TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  0.31  1
BH725705|BH725705.1 BOMMW86TR BO_2_3_KB Brassica oleracea genomic clone BOMMW86, DNA sequence.    42  0.67  2
BE035363|BE035363.1 MM06G12 MM Mesembryanthemum crystallinum cDNA 5', mRNA sequence.    40  0.74  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_19(AC116956|pid:none) Dictyostelium discoideum chromoso...   201   5e-51
EF538805_1(EF538805|pid:none) Trypanoplasma borreli cathepsin L ...    87   2e-16
AY713477_1(AY713477|pid:none) Cryptobia salmositica cysteine pro...    78   1e-13
(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...    75   5e-13
FJ917406_1(FJ917406|pid:none) Trypanosoma cruzi isolate MHOM/CO/...    75   5e-13
FJ040836_1(FJ040836|pid:none) Trypanosoma cruzi isolate MHOM/CO/...    75   5e-13
U41454_1(U41454|pid:none) Trypanosoma cruzi cysteine protease cr...    75   5e-13
AJ719384_1(AJ719384|pid:none) Gallus gallus mRNA for hypothetica...    75   5e-13
FJ917404_1(FJ917404|pid:none) Trypanosoma cruzi isolate MHOM/CO/...    75   5e-13
U41444_1(U41444|pid:none) Trypanosoma cruzi cysteine protease cr...    75   5e-13

 psg: 0.75  gvh: 0.38  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSI616 is cyt

>SSI616Z.Seq
----------TGATGAAAATACTTTAATTAAAACCATCGTCAATGATGGTCCAGTAAGTA
TTCGCGTTGAAGCTTCAACATGGCAATCCTATTCTGGTGGCATTATTACAACTGGTTGTG
GTAAAAACATTGATCATTGTGTTCAAGTAGTTGGTTTAGAAGTTGATAAAACTGATCCAT
CAAATCCAGTTCAATATTATATCATTAGAAATTCTTGGGGTACTGATTGGGGTATTGATT
TTTTCATTTACGTAGCTACTGGTTCTGATTTATGTGGTATTACTTATGAATCAACAATGG
TTGATGTATAAATACATTAATTTTCCTCTTCTCTCTCTCTATATTTGTATGATTTCTGTT
GTAAAAAAAAAAAAAAAAAAA