>SSI610 (SSI610Q) /CSM/SS/SSI6-A/SSI610Q.Seq.d/
XXXXXXXXXXTAAAAAATGGATTGTGCAATTACAAAAGATGTAGAGGATATGTTAAGAAA
ATTTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTGTAAAACGTTTGAAGGA
AACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGA
TAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAA
GAAATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGACACTGA
TAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGA
TGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGA
CAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGA
ACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATT
TTTAAAAAAATTTAAATAAATAAATAAATAAAAAATAATCTTTTAAAAATA

---KMDCAITKDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLDKDK
DGIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDA
IAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsfl
kkfk*ink*kiif*k

Frame A:
---kkwivqlqkm*ric*enliqmvmvilhlmkl*nv*rkpvqkihyvlplqclflliri
rmelfq*krfmairlmllqrnckrqlttsvtts*kamtlirmegshgmkyaig*iktiqm
qllhl*llkislvnwikimtds*psvnfrstllntkvsqnnk*fivqiq*lliniynfhf
*knlnk*inkk*sfkn


Frame B:
---knglcnykrcrgyvkki*fkw*w*yyi**scktfegnrfkrsitcclfnvyfs**g*
gwnyfnkrdswp*g*ccckeiakgn*qhl*qllerl*h**gwkdlmg*smqlgk*kqsrc
ncstydc*kfl**ig*r**qirnqv*tsgvry*iqksprtinnllfkfnny*stfiifif
kki*ink*iknnllki


Frame C:
---KMDCAITKDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLDKDK
DGIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDA
IAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsfl
kkfk*ink*kiif*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM417 (SSM417Q) /CSM/SS/SSM4-A/SSM417Q.Seq.d/                       1055   0.0
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                       1055   0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                       1055   0.0
SSL192 (SSL192Q) /CSM/SS/SSL1-D/SSL192Q.Seq.d/                       1055   0.0
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/                       1055   0.0
SSK850 (SSK850Q) /CSM/SS/SSK8-C/SSK850Q.Seq.d/                       1055   0.0
SSK751 (SSK751Q) /CSM/SS/SSK7-C/SSK751Q.Seq.d/                       1055   0.0
SSK729 (SSK729Q) /CSM/SS/SSK7-B/SSK729Q.Seq.d/                       1055   0.0
SSK703 (SSK703Q) /CSM/SS/SSK7-A/SSK703Q.Seq.d/                       1055   0.0
SSK126 (SSK126Q) /CSM/SS/SSK1-B/SSK126Q.Seq.d/                       1055   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein.  1055  0.0  1
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.   989  0.0  2
BQ875038|BQ875038.1 QGI6P19.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI6P19, mRNA sequence.    42  0.027  2
AL354807|AL354807.6 Human DNA sequence from clone RP11-522F22 on chromosome 13.    42  0.067  4
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    38  0.100  6
AC009110|AC009110.10 Homo sapiens chromosome 16 clone RP11-467O15, complete sequence.    38  0.13  6
AC027274|AC027274.7 Homo sapiens chromosome 16 clone CTA-330E4, WORKING DRAFT SEQUENCE, 2 ordered pieces.    38  0.39  3
AC026535|AC026535.3 Homo sapiens chromosome 1 clone RP11-368K17 map 1, WORKING DRAFT SEQUENCE, 12 unordered pieces.    36  1.2  5
AP002029|AP002029.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F24C7.    34  1.2  5
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    32  1.3  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...    79   7e-14
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    69   7e-11
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=...    69   9e-11
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA...    69   9e-11
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    67   3e-10
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     67   3e-10
(P09485) RecName: Full=Calcium-binding protein LPS1-alpha;             57   4e-07
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara...    56   8e-07
EF523472_1(EF523472|pid:none) Synthetic construct putative aller...    55   1e-06
(O64943) RecName: Full=Polcalcin Jun o 2; AltName: Full=Calcium-...    55   2e-06

 psg: 0.75  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI610 is nuc

>SSI610Z.Seq
----------TAAAAAATGGATTGTGCAATTACAAAAGATGTAGAGGATATGTTAAGAAA
ATTTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTGTAAAACGTTTGAAGGA
AACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGA
TAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAA
GAAATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGACACTGA
TAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGA
TGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGA
CAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGA
ACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATT
TTTAAAAAAATTTAAATAAATAAATAAATAAAAAATAATCTTTTAAAAATA