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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI592
Library SS
(Link to library)
Clone ID SSI592
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11084-1
Original site URL
Representative seq. ID SSI592Z
(Link to Original site)
Representative DNA sequence 
>SSI592 (SSI592Q) /CSM/SS/SSI5-D/SSI592Q.Seq.d/
XXXXXXXXXXGGTGGGTAGACGTTCATCCACCGTTCCATTGGTTTATCAAGCATTAAATT
GGAAACACGGTGTTTTCATGGGTGCTAGCACTGCATCAGAATTAACTGCCGCTGCCGAAG
GTACCGTTGGTACACTTAGACATGACCCATTCGCTATGTTACCATTCTGTGGTTATAATA
TGGGTGATTACTTTGCTCATTGGTTATCAATGGAACAAAAAGCCGGTTCAAATGCTGATA
AACTTCCAAAGATCTTTTATGTCAATTGGTTTAGAAAGAACAAGACCTCTGGTAAATTCT
TATGGCCAGGTTTTGGTGAAAATGTTAGAGTCTTAAAATGGATCTTTGATCGTTGTAACT
CTACTCTCGATACAACCGATGGTAAAGCAACTCAAACTCCAATCGGTTTCGTACCTTCAA
ATAATTCAATTGATCTCAATGGTTTGGAAATTAATAAATCTTCACTCAAAGAATTATTTA
GTTTAAATAAATCTGAATGGTTACATGATCTTAAAAGTATGAGACAATTTTGTCAACAAT
TTGGTGATAGATTACCAAATGAAATTAAAAATCAAATGGATCAATTAGAAAATAGATTAA
ATAAAGATTAAAATAAAAATAAATTTTGAAATATATAATTAATTATAAAAAATTATTATA
TATGTATAAAAATAAAAAAAAAAA
sequence update 1998. 1. 9
Translated Amino Acid sequence 
---VGRRSSTVPLVYQALNWKHGVFMGASTASELTAAAEGTVGTLRHDPFAMLPFCGYNM
GDYFAHWLSMEQKAGSNADKLPKIFYVNWFRKNKTSGKFLWPGFGENVRVLKWIFDRCNS
TLDTTDGKATQTPIGFVPSNNSIDLNGLEINKSSLKELFSLNKSEWLHDLKSMRQFCQQF
GDRLPNEIKNQMDQLENRLNKD*nknkf*ni*liiknyyicikikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---VGRRSSTVPLVYQALNWKHGVFMGASTASELTAAAEGTVGTLRHDPFAMLPFCGYNM
GDYFAHWLSMEQKAGSNADKLPKIFYVNWFRKNKTSGKFLWPGFGENVRVLKWIFDRCNS
TLDTTDGKATQTPIGFVPSNNSIDLNGLEINKSSLKELFSLNKSEWLHDLKSMRQFCQQF
GDRLPNEIKNQMDQLENRLNKD*nknkf*ni*liiknyyicikikkk


Frame B:
---wvdvhppfhwfikh*igntvfswvlalhqn*lplpkvplvhldmthslcyhsvviiw
vitlligyqwnkkpvqmlinfqrsfmsiglertrplvnsygqvlvkmles*ngslivvtl
lsiqpmvkqlklqsvsylqiiqlismvwklinlhsknylv*inlngymilkv*dnfvnnl
vidyqmklkikwin*kid*ikikikinfeiyn*l*kiiiyv*k*kkk


Frame C:
---g*tfihrsiglssikletrcfhgc*hcirincrcrryrwyt*t*piryvtilwl*yg
*llcslvingtksrfkc**tskdllcqlv*keqdlw*ilmarfw*kc*slkmdl*sl*ly
srynrw*snsnsnrfrtfk*fn*sqwfgn**iftqrii*fk*i*mvt*s*kyetilstiw
**itk*n*ksngsirk*ik*rlk*k*ilkyiinykkllymyknkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI592 (SSI592Q) /CSM/SS/SSI5-D/SSI592Q.Seq.d/                       1132   0.0
SLE512 (SLE512Q) /CSM/SL/SLE5-A/SLE512Q.Seq.d/                       1116   0.0
CHQ822 (CHQ822Q) /CSM/CH/CHQ8-A/CHQ822Q.Seq.d/                       1116   0.0
AFN438 (AFN438Q) /CSM/AF/AFN4-B/AFN438Q.Seq.d/                       1116   0.0
SSD782 (SSD782Q) /CSM/SS/SSD7-D/SSD782Q.Seq.d/                       1007   0.0
SSM521 (SSM521Q) /CSM/SS/SSM5-A/SSM521Q.Seq.d/                        957   0.0
CHR640 (CHR640Q) /CSM/CH/CHR6-B/CHR640Q.Seq.d/                        946   0.0
SSA358 (SSA358Q) /CSM/SS/SSA3-C/SSA358Q.Seq.d/                        918   0.0
VHP245 (VHP245Q) /CSM/VH/VHP2-B/VHP245Q.Seq.d/                        910   0.0
AHO406 (AHO406Q) /CSM/AH/AHO4-A/AHO406Q.Seq.d/                        906   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116925|AC116925.2 Dictyostelium discoideum chromosome 2 map 4189423-4228998 strain AX4, complete sequence.  1116  0.0  1
M59372|M59372.1 N.frontalis phosphoenolpyruvate carboxykinase (pepck) mRNA, complete cds.    54  2e-08  3
CD267689|CD267689.1 tab92g11.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:PPCM_HUMAN Q16822 PHOSPHOENOLPYRUVATE CARBOXYKINASE, MITOCHONDRIAL PRECURSOR [GTP] ;, mRNA sequence.    38  0.003  2
AC099075|AC099075.5 Rattus norvegicus clone CH230-41C6, WORKING DRAFT SEQUENCE, 8 unordered pieces.    40  0.042  2
AC096308|AC096308.7 Rattus norvegicus clone CH230-107L3, WORKING DRAFT SEQUENCE, 3 unordered pieces.    40  0.045  2
AC095574|AC095574.6 Rattus norvegicus clone CH230-8A16, WORKING DRAFT SEQUENCE, 5 unordered pieces.    40  0.046  2
AL954678|AL954678.7 Zebrafish DNA sequence from clone CH211-207E14 in linkage group 9.    36  0.078  4
AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence.    42  0.23  4
AL023284|AL023284.1 Human DNA sequence from clone 406A7 on chromosome 6q23-24. Contains  three pseudogenes similar to Elongation Factor 1-Alpha (EF-1-ALPHA,  Statin S1), 60S Acidic Ribosomal Protein P1 and NADH-Ubiquinone  Oxidoreductase 15 kDa subunit, and part of the Microtuble Associated Protein E-MAP-115 gene. Contains ESTs, STSs and GSSs.    40  1.4  4
AP001924|AP001924.5 Homo sapiens genomic DNA, chromosome 11 clone:RP11-166D19, complete sequence.    40  1.7  2
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869Z4) RecName: Full=Phosphoenolpyruvate carboxykinase [GTP], ...   379   e-104
CP000088_81(CP000088|pid:none) Thermobifida fusca YX, complete g...   192   1e-47
(Q5L4X1) RecName: Full=Phosphoenolpyruvate carboxykinase [GTP]; ...   190   3e-47
(Q821M4) RecName: Full=Phosphoenolpyruvate carboxykinase [GTP]; ...   190   3e-47
(Q256B8) RecName: Full=Phosphoenolpyruvate carboxykinase [GTP]; ...   187   3e-46
(Q9PLL6) RecName: Full=Phosphoenolpyruvate carboxykinase [GTP]; ...   185   1e-45
CP000700_59(CP000700|pid:none) Sphingomonas wittichii RW1 plasmi...   185   1e-45
CP001348_211(CP001348|pid:none) Clostridium cellulolyticum H10, ...   184   2e-45
DQ144903_1(DQ144903|pid:none) Salmo salar phosphoenolpyruvate ca...   181   1e-44
AM884176_79(AM884176|pid:none) Chlamydia trachomatis strain L2/4...   181   2e-44
protein update 2009. 6.13
PSORT 

 psg: 0.85  gvh: 0.53  alm: 0.50  top: 0.37  tms: 0.00  mit: 0.42  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 32.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum

>> prediction for SSI592 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI592Z
3' end seq. 
>SSI592Z.Seq
----------GGTGGGTAGACGTTCATCCACCGTTCCATTGGTTTATCAAGCATTAAATT
GGAAACACGGTGTTTTCATGGGTGCTAGCACTGCATCAGAATTAACTGCCGCTGCCGAAG
GTACCGTTGGTACACTTAGACATGACCCATTCGCTATGTTACCATTCTGTGGTTATAATA
TGGGTGATTACTTTGCTCATTGGTTATCAATGGAACAAAAAGCCGGTTCAAATGCTGATA
AACTTCCAAAGATCTTTTATGTCAATTGGTTTAGAAAGAACAAGACCTCTGGTAAATTCT
TATGGCCAGGTTTTGGTGAAAATGTTAGAGTCTTAAAATGGATCTTTGATCGTTGTAACT
CTACTCTCGATACAACCGATGGTAAAGCAACTCAAACTCCAATCGGTTTCGTACCTTCAA
ATAATTCAATTGATCTCAATGGTTTGGAAATTAATAAATCTTCACTCAAAGAATTATTTA
GTTTAAATAAATCTGAATGGTTACATGATCTTAAAAGTATGAGACAATTTTGTCAACAAT
TTGGTGATAGATTACCAAATGAAATTAAAAATCAAATGGATCAATTAGAAAATAGATTAA
ATAAAGATTAAAATAAAAATAAATTTTGAAATATATAATTAATTATAAAAAATTATTATA
TATGTATAAAAATAAAAAAAAAAA
Length of 3' end seq. 674
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -