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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI591
Library SS
(Link to library)
Clone ID SSI591
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14096-1
Original site URL
Representative seq. ID SSI591Z
(Link to Original site)
Representative DNA sequence 
>SSI591 (SSI591Q) /CSM/SS/SSI5-D/SSI591Q.Seq.d/
XXXXXXXXXXAAAAATTGGTCAAACCGATGTTGATGTATGGATTGTCAAAGGTAAACAAC
AATGCAATGTAACCAGATCTTGTATTCTAATTCAAAAAGATACATGTACCCTTATGTCTG
CCAATTTCGGTAACAAAGTTAAATCAAATCTAGGTTTCTCACTTTTAAATTATTATAGAT
ATGAAAATAAACCACATTATGATAAATTCCAATTACCATCACAATGTTGGGATGTTAAAC
CAAAAGATGAAAATGAAAATAAAGAAGAACAAGGTTTATTTGCAAATGAAGAAGAACTAG
AAAATAAAGAATATTTTGGTGATAACCAACAAGCTCCATCAATGGGAATTACTAAAAATA
ATCCACATCTAAATAATAATAATAATAATAAAAAATATCATCATAGGGAACATGAAACAC
CAAATCCAGACCTTTTCAAAACAACCACAAAAACATCAACAAAAACAACATCATTTTCAA
GGGCCACTAATGATTCACCAAAATCAATTGATTTCCATCACTTATTTTAATTTTTAAATT
CTAAATAAAGTTTAAATTTAAATATTTTCTTTTGTTTTTTTTTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
sequence update 1998. 1. 9
Translated Amino Acid sequence 
---KIGQTDVDVWIVKGKQQCNVTRSCILIQKDTCTLMSANFGNKVKSNLGFSLLNYYRY
ENKPHYDKFQLPSQCWDVKPKDENENKEEQGLFANEEELENKEYFGDNQQAPSMGITKNN
PHLNNNNNNKKYHHREHETPNPDLFKTTTKTSTKTTSFSRATNDSPKSIDFHHLF*flns
k*slnlniffcfff*kkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---KIGQTDVDVWIVKGKQQCNVTRSCILIQKDTCTLMSANFGNKVKSNLGFSLLNYYRY
ENKPHYDKFQLPSQCWDVKPKDENENKEEQGLFANEEELENKEYFGDNQQAPSMGITKNN
PHLNNNNNNKKYHHREHETPNPDLFKTTTKTSTKTTSFSRATNDSPKSIDFHHLF*flns
k*slnlniffcfff*kkkkkkkkkkk


Frame B:
---klvkpmlmyglskvnnnam*pdlvf*fkkihvplclpisvtklnqi*vshf*iiidm
kinhiminsnyhhnvgmlnqkmkmkikknkvylqmkkn*kiknilvitnklhqwellkii
hi*iiiiiikniiignmkhqiqtfskqpqkhqqkqhhfqgplmihqnqlisityfnf*il
nkv*i*ifsfvfffkkkkkkkkkkk


Frame C:
---nwsnrc*cmdcqr*ttmqcnqilysnskrymypyvcqfr*qs*iksrfltfkll*i*
k*ttl**ipititmlgc*tkr*k*k*rrtrfick*rrtrk*rifw**ptssingny*k*s
tsk******kiss*gt*ntksrpfqnnhkninknniifkgh**ftkin*fpslilifkf*
ikfkfkyfllffflkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI591 (SSI591Q) /CSM/SS/SSI5-D/SSI591Q.Seq.d/                        678   0.0
SSM335 (SSM335Q) /CSM/SS/SSM3-B/SSM335Q.Seq.d/                        662   0.0
SSK867 (SSK867Q) /CSM/SS/SSK8-C/SSK867Q.Seq.d/                        662   0.0
SSK701 (SSK701Q) /CSM/SS/SSK7-A/SSK701Q.Seq.d/                        662   0.0
SSK159 (SSK159Q) /CSM/SS/SSK1-C/SSK159Q.Seq.d/                        662   0.0
SSF594 (SSF594Q) /CSM/SS/SSF5-D/SSF594Q.Seq.d/                        662   0.0
SSI343 (SSI343Q) /CSM/SS/SSI3-B/SSI343Q.Seq.d/                        654   0.0
SSM571 (SSM571Q) /CSM/SS/SSM5-C/SSM571Q.Seq.d/                        646   0.0
SSD307 (SSD307Q) /CSM/SS/SSD3-A/SSD307Q.Seq.d/                        646   0.0
SSH876 (SSH876Q) /CSM/SS/SSH8-D/SSH876Q.Seq.d/                        642   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CC578756|CC578756.1 CH240_457F8.T7 CHORI-240 Bos taurus genomic clone CH240_457F8, genomic survey sequence.    52  0.008  1
AC145187|AC145187.2 Bos taurus clone RP42-30M12, WORKING DRAFT SEQUENCE, 3 ordered pieces.    52  0.008  1
AC145255|AC145255.2 Bos taurus clone RP42-435F20, WORKING DRAFT SEQUENCE, 4 ordered pieces.    52  0.030  2
BJ097216|BJ097216.1 Xenopus laevis cDNA clone:XL173m06, 5' end, single read.    50  0.033  1
BG893125|BG893125.1 daa88e02.y1 Wellcome CRC pRN3 St13 17 egg animal cap Xenopus laevis cDNA clone IMAGE:4084323 5' similar to TR:Q9UKY7 Q9UKY7 HYPOTHETICAL 27.3 KD PROTEIN. ;, mRNA sequence.    50  0.033  1
BG730427|BG730427.1 df44c04.y1 Wellcome CRC pRN3 head Xenopus laevis cDNA clone IMAGE:3581190 5' similar to TR:Q9UKY7 Q9UKY7 HYPOTHETICAL 27.3 KD PROTEIN. ;, mRNA sequence.    50  0.033  1
BF047577|BF047577.1 dc79g04.y1 NICHD XGC OO1 Xenopus laevis cDNA clone IMAGE:3403350 5' similar to TR:Q9UKY7 Q9UKY7 HYPOTHETICAL 27.3 KD PROTEIN. ;, mRNA sequence.    50  0.033  1
AW641907|AW641907.1 cm12g07.w1 Blackshear/Soares normalized Xenopus egg library Xenopus laevis cDNA clone PBX0111G07 5', mRNA sequence.    50  0.033  1
BU915191|BU915191.1 AGENCOURT_10493095 NICHD XGC OO1 Xenopus laevis cDNA clone IMAGE:6641844 5', mRNA sequence.    50  0.033  1
BU912188|BU912188.1 AGENCOURT_10457531 NICHD XGC OO1 Xenopus laevis cDNA clone IMAGE:6638332 5', mRNA sequence.    50  0.033  1
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116550_6(AC116550|pid:none) Dictyostelium discoideum chromosom...    42   0.011
AC116550_3(AC116550|pid:none) Dictyostelium discoideum chromosom...    41   0.024
protein update 2009. 2. 1
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI591 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI591Z
3' end seq. 
>SSI591Z.Seq
----------AAAAATTGGTCAAACCGATGTTGATGTATGGATTGTCAAAGGTAAACAAC
AATGCAATGTAACCAGATCTTGTATTCTAATTCAAAAAGATACATGTACCCTTATGTCTG
CCAATTTCGGTAACAAAGTTAAATCAAATCTAGGTTTCTCACTTTTAAATTATTATAGAT
ATGAAAATAAACCACATTATGATAAATTCCAATTACCATCACAATGTTGGGATGTTAAAC
CAAAAGATGAAAATGAAAATAAAGAAGAACAAGGTTTATTTGCAAATGAAGAAGAACTAG
AAAATAAAGAATATTTTGGTGATAACCAACAAGCTCCATCAATGGGAATTACTAAAAATA
ATCCACATCTAAATAATAATAATAATAATAAAAAATATCATCATAGGGAACATGAAACAC
CAAATCCAGACCTTTTCAAAACAACCACAAAAACATCAACAAAAACAACATCATTTTCAA
GGGCCACTAATGATTCACCAAAATCAATTGATTTCCATCACTTATTTTAATTTTTAAATT
CTAAATAAAGTTTAAATTTAAATATTTTCTTTTGTTTTTTTTTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 610
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -