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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI588
Library SS
(Link to library)
Clone ID SSI588
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID SSI588Z
(Link to Original site)
Representative DNA sequence 
>SSI588 (SSI588Q) /CSM/SS/SSI5-D/SSI588Q.Seq.d/
XXXXXXXXXXAAATCACACATTTTCGATCCATCATCAGAAGTTGGAGTTTTAAATATTGT
ATCACAATTAAAAGGTATCAAAGGATCAGTTTTTGTTGCCAAAGAATCTGACACCCAATT
TGAAATTGAAGGTGCCCAAAATATTTTATTATCAGAGCCTCAAAAATTCAACCAACCTTA
TCAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCTCAAAATCAAGACTCAACCATC
AAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTTTCTTTCTTTACTGCTGCTTCT
GCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAAGTTGAACAATCATTTTTACAA
GATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGTAGTGGATCAAGTAGTTCAGGA
TCAAATGAACCAACTAAACAACATTTCACTTATGTTACTGGTCCAGTCCTTTCTGCTTAT
TTGATTATCTCAATCTTATTAGCCATTTTATTCACTGGTATTTGTTGTATTTCTGATCTC
CAAGTTCCAGATAGATACGAAGCACCAAAGAGCAAAGTACTTTAAAAAAAAAAAAATAAT
AAAAAATTAATACCAAATAATTTATAAAACAAATAAAATATNACATATAATAAAAAATAA
AAAATAAAC
sequence update 1998. 1. 9
Translated Amino Acid sequence 
---ithfrsiirswsfkycitikryqrisfccqri*hpi*n*RCPKYFIIRASKIQPTLS
NKVVDIVVVLLAQNQDSTIKQFQSVVEKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQD
GSSSLNSASQQGSGSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQ
VPDRYEAPKSKVL*kkknnkklipnnl*nk*nxtynkk*kin
Translated Amino Acid sequence (All Frames) 
Frame A:
---nhtfsihhqklef*ilyhn*kvskdqfllpknltpnlklkvpkifyyqslknstnli
kqsc*yrscftrsksrlnhqtipicc*kiiirfflyccfcs*i*cssyfqqts*tiiftr
wfiiikfsqptr*wik*frik*tn*ttfhlcywsspfclfdylnlishfihwyllyf*sp
ssr*irstkeqstlkkkk**kintk*fikqikyxi**kiknk


Frame B:
---ithfrsiirswsfkycitikryqrisfccqri*hpi*n*RCPKYFIIRASKIQPTLS
NKVVDIVVVLLAQNQDSTIKQFQSVVEKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQD
GSSSLNSASQQGSGSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQ
VPDRYEAPKSKVL*kkknnkklipnnl*nk*nxtynkk*kin


Frame C:
---shifdpssevgvlnivsqlkgikgsvfvakesdtqfeiegaqnillsepqkfnqpyq
tkllis*lfyslkiktqpsnnsnlllknhhsflsllllllmnlmfkllstnklnnhfykm
vhhh*iqpankvvdqvvqdqmnqlnnislmllvqsflli*lsqsy*pfyslvfvvflisk
fqidtkhqrakyfkkkkiikn*yqiiyktnkixhiiknkk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI588 (SSI588Q) /CSM/SS/SSI5-D/SSI588Q.Seq.d/                       1136   0.0
SSL653 (SSL653Q) /CSM/SS/SSL6-C/SSL653Q.Seq.d/                       1120   0.0
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/                       1114   0.0
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/                       1114   0.0
SSE549 (SSE549Q) /CSM/SS/SSE5-C/SSE549Q.Seq.d/                       1114   0.0
SSC826 (SSC826Q) /CSM/SS/SSC8-B/SSC826Q.Seq.d/                       1114   0.0
SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/                       1110   0.0
FC-AZ21 (FC-AZ21Q) /CSM/FC/FC-AZ/FC-AZ21Q.Seq.d/                     1110   0.0
SSF812 (SSF812Q) /CSM/SS/SSF8-A/SSF812Q.Seq.d/                       1106   0.0
SSA685 (SSA685Q) /CSM/SS/SSA6-D/SSA685Q.Seq.d/                       1106   0.0
own update 2003. 6.15
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   505  0.0  3
AC123184|AC123184.4 Rattus norvegicus clone CH230-246F14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.55  1
AC128812|AC128812.3 Rattus norvegicus clone CH230-74E1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.55  1
BZ280299|BZ280299.1 CH230-393O23.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-393O23, DNA sequence.    46  0.55  1
BZ237908|BZ237908.1 CH230-418F3.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-418F3, DNA sequence.    46  0.55  1
AP004824|AP004824.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 3/10.    38  1.6  5
AX151396|AX151396.1 Sequence 1 from Patent WO0138351.             36  1.6  4
AF332093|AF332093.1 White spot syndrome virus, complete genome.    36  1.6  4
AC118764|AC118764.3 Rattus norvegicus clone CH230-335N22, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    38  1.8  2
AL117193|AL117193.2 Caenorhabditis elegans YAC Y105C5A.           42  2.1  5
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...   149   7e-35
protein update 2009. 2. 1
PSORT 

 psg: 0.72  gvh: 0.54  alm: 0.14  top: 0.50  tms: 0.07  mit: 0.43  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 20.0 %: Golgi
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SSI588 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI588Z
3' end seq. 
>SSI588Z.Seq
----------AAATCACACATTTTCGATCCATCATCAGAAGTTGGAGTTTTAAATATTGT
ATCACAATTAAAAGGTATCAAAGGATCAGTTTTTGTTGCCAAAGAATCTGACACCCAATT
TGAAATTGAAGGTGCCCAAAATATTTTATTATCAGAGCCTCAAAAATTCAACCAACCTTA
TCAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCTCAAAATCAAGACTCAACCATC
AAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTTTCTTTCTTTACTGCTGCTTCT
GCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAAGTTGAACAATCATTTTTACAA
GATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGTAGTGGATCAAGTAGTTCAGGA
TCAAATGAACCAACTAAACAACATTTCACTTATGTTACTGGTCCAGTCCTTTCTGCTTAT
TTGATTATCTCAATCTTATTAGCCATTTTATTCACTGGTATTTGTTGTATTTCTGATCTC
CAAGTTCCAGATAGATACGAAGCACCAAAGAGCAAAGTACTTTAAAAAAAAAAAAATAAT
AAAAAATTAATACCAAATAATTTATAAAACAAATAAAATATNACATATAATAAAAAATAA
AAAATAAAC
Length of 3' end seq. 659
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -