SSI583
Library SS
(Link to library)
Clone ID SSI583
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05117-1
Original site URL
Representative seq. ID SSI583Z
(Link to Original site)
Representative DNA sequence
>SSI583 (SSI583Q) /CSM/SS/SSI5-D/SSI583Q.Seq.d/
XXXXXXXXXXAAAAAGTTGTTGTTTTTGGTATTCCTGGAAATAATCCAACTGATGATTTC
CATCAAATTCCATCATTTGTTAAAAATGTCGATAAATTTTACAATAAAGGAATTGATAAT
GTCATCTGTTTACAAAGTGCAGATGCCGCTATTTTAAGAGCTAAATCAATTAGTTTAGAT
CCACTCAGAACTATTGGATTTTTACAAGATAAAGATTGCAAATTTGCTGTGGATAATGCA
TTAACAGAAGATGAATATTTAAAAGGTTTAGGTACAGAAAGTCCAGTTCATGAATTTAAA
AGATTTGCATTAATTATTGATAATGGTAGAATTGTTTTTGAAAGTGTTGAAAAAGATCCA
ACAGATTATGAACATACAACTGCTGATGTTGTACTTAAACAACTTTAAAAAAAATAATAA
TAATAAATAAAAAAATAAAAAAGAAAACAAAACAAATAATAACAATAACAATACGAGAAA
TAATATAAAAAAAAAAAAAAAAATTAAAAAAATTAAAAAAAAAAAAAAGACAAATATATA
ATAAAAA
sequence update 1998. 1. 9
Translated Amino Acid sequence
---KVVVFGIPGNNPTDDFHQIPSFVKNVDKFYNKGIDNVICLQSADAAILRAKSISLDP
LRTIGFLQDKDCKFAVDNALTEDEYLKGLGTESPVHEFKRFALIIDNGRIVFESVEKDPT
DYEHTTADVVLKQL*kk****ikk*krkqnk**q*qyek*ykkkkkn*kn*kkkkdkyii
k


Translated Amino Acid sequence (All Frames)
Frame A:
---ksccfwyswk*sn**fpsnsiic*kcr*ilq*rn**chlftkcrcryfks*in*frs
tqnywiftr*rlqiccg*cinrr*ifkrfryrksss*i*kiciny**w*ncf*kc*krsn
rl*tync*cct*ttlkkiiiinkkikkktkqiititireii*kkkkklkklkkkkrqiyn
k


Frame B:
---KVVVFGIPGNNPTDDFHQIPSFVKNVDKFYNKGIDNVICLQSADAAILRAKSISLDP
LRTIGFLQDKDCKFAVDNALTEDEYLKGLGTESPVHEFKRFALIIDNGRIVFESVEKDPT
DYEHTTADVVLKQL*kk****ikk*krkqnk**q*qyek*ykkkkkn*kn*kkkkdkyii
k


Frame C:
---kllflvfleiiqlmisikfhhllkmsinftikelimssvykvqmplf*elnqlv*ih
selldfykikianllwimh*qkmni*kv*vqkvqfmnlkdlh*llimvelflkvlkkiqq
imniqllmlylnnfkknnnnk*knkkenktnnnnnntrnnikkkkkikkikkkkktni**
k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ321 (VSJ321Q) /CSM/VS/VSJ3-A/VSJ321Q.Seq.d/ 783 0.0
VSF320 (VSF320Q) /CSM/VS/VSF3-A/VSF320Q.Seq.d/ 783 0.0
SSI583 (SSI583Q) /CSM/SS/SSI5-D/SSI583Q.Seq.d/ 783 0.0
SSF434 (SSF434Q) /CSM/SS/SSF4-B/SSF434Q.Seq.d/ 783 0.0
SLE583 (SLE583Q) /CSM/SL/SLE5-D/SLE583Q.Seq.d/ 38 0.14
SLB802 (SLB802Q) /CSM/SL/SLB8-A/SLB802Q.Seq.d/ 38 0.14
SSG519 (SSG519Q) /CSM/SS/SSG5-A/SSG519Q.Seq.d/ 36 0.54
SFE819 (SFE819Q) /CSM/SF/SFE8-A/SFE819Q.Seq.d/ 36 0.54
AFH864 (AFH864Q) /CSM/AF/AFH8-C/AFH864Q.Seq.d/ 36 0.54
CHB844 (CHB844Q) /CSM/CH/CHB8-B/CHB844Q.Seq.d/ 34 2.1

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX465381|BX465381.1 Arabidopsis thaliana transposon insertion STS SM_3.36992. 36 0.35 2
BX465374|BX465374.1 Arabidopsis thaliana transposon insertion STS SM_3.36991. 36 0.35 2
AP004967|AP004967.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT27L02, TM0144. 46 0.45 1
BE036869|BE036869.1 MP07F09 MP Mesembryanthemum crystallinum cDNA 5', mRNA sequence. 46 0.45 1
AL824456|AL824456.1 Arabidopsis thaliana transposon insertion STS SM_3.16590. 36 0.50 2
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12, section 1 of 9 of the complete sequence. 38 0.51 4
AL824484|AL824484.1 Arabidopsis thaliana transposon insertion STS SM_3.16593. 36 0.83 2
BX548086|BX548086.1 Arabidopsis thaliana transposon insertion STS SM_3.36995. 36 0.84 2
AL824474|AL824474.1 Arabidopsis thaliana transposon insertion STS SM_3.16592. 36 0.84 2
AL824234|AL824234.1 Arabidopsis thaliana transposon insertion STS SM_3.16534. 36 0.84 2
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF122396_1(EF122396|pid:none) Citrus cv. Shiranuhi putative thio... 73 4e-12
BT070429_1(BT070429|pid:none) Picea sitchensis clone WS02729_C13... 69 6e-11
EF087055_1(EF087055|pid:none) Picea sitchensis clone WS02751_B20... 69 6e-11
DQ887076_1(DQ887076|pid:none) Arachis hypogaea thioredoxin fold ... 68 1e-10
EU964545_1(EU964545|pid:none) Zea mays clone 279798 peroxiredoxi... 68 2e-10
(Q9M7T0) RecName: Full=Peroxiredoxin-2F, mitochondrial; ... 67 2e-10
AF133302_1(AF133302|pid:none) Brassica rapa subsp. pekinensis ty... 66 7e-10
GN105653_1(GN105653|pid:none) Sequence 10434 from Patent WO20090... 64 3e-09
FM162015_1(FM162015|pid:none) Pisum sativum mRNA for peroxiredox... 64 3e-09
CP000083_127(CP000083|pid:none) Colwellia psychrerythraea 34H, c... 64 3e-09
protein update 2009. 6.13
PSORT

psg: 0.92 gvh: 0.44 alm: 0.44 top: 0.37 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for SSI583 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI583Z
3' end seq.
>SSI583Z.Seq
----------AAAAAGTTGTTGTTTTTGGTATTCCTGGAAATAATCCAACTGATGATTTC
CATCAAATTCCATCATTTGTTAAAAATGTCGATAAATTTTACAATAAAGGAATTGATAAT
GTCATCTGTTTACAAAGTGCAGATGCCGCTATTTTAAGAGCTAAATCAATTAGTTTAGAT
CCACTCAGAACTATTGGATTTTTACAAGATAAAGATTGCAAATTTGCTGTGGATAATGCA
TTAACAGAAGATGAATATTTAAAAGGTTTAGGTACAGAAAGTCCAGTTCATGAATTTAAA
AGATTTGCATTAATTATTGATAATGGTAGAATTGTTTTTGAAAGTGTTGAAAAAGATCCA
ACAGATTATGAACATACAACTGCTGATGTTGTACTTAAACAACTTTAAAAAAAATAATAA
TAATAAATAAAAAAATAAAAAAGAAAACAAAACAAATAATAACAATAACAATACGAGAAA
TAATATAAAAAAAAAAAAAAAAATTAAAAAAATTAAAAAAAAAAAAAAGACAAATATATA
ATAAAAA
Length of 3' end seq. 537
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -