>SSI573 (SSI573Q) /CSM/SS/SSI5-D/SSI573Q.Seq.d/
XXXXXXXXXXTAAAAAGAATTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAGTTAAAGA
TGTAATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTTTATAAATTGCCACT
ATAATCAATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTT
TAGTTACTTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGAAAAAAAA
AAACAAAAAAAAAAAGAAAAAGGTTTTTTTTTTAATAATAATAATAATAATAATACAATA
AATTTAAATAAAAATAAAGAATAAACCTTATAGTGGGTTTACCAATTTATAAAAAAAAAA
AAAA

---kefkkkkknrkkkvkdvmvkpk*ngnpkkdlyklpl*SMYRYCSVCVYAVRSSLLFS
YFNLNLYCNFYKKKKKKKKNKKKKKKVFFLIIIIIIIQ*i*ikiknkpysgftnl*kkkk

Frame A:
---kknlkkkkkiekkklkm*w*nqsrmeiqkkifinchynqcidivpsvcmllgpvcsl
vtli*iyivifikkkkrkkktkkkrkrfff*******ynkfk*k*rinlivglpiykkkk


Frame B:
---kri*kkkkk*kkks*rcngktkvewkskkrsl*iatiinv*ilfrlcvcc*vqfal*
ll*fksil*fl*kkkkekkkqkkkekgfffnnnnnnntinlnknke*tl*wvyqfikkkk


Frame C:
---kefkkkkknrkkkvkdvmvkpk*ngnpkkdlyklpl*SMYRYCSVCVYAVRSSLLFS
YFNLNLYCNFYKKKKKKKKNKKKKKKVFFLIIIIIIIQ*i*ikiknkpysgftnl*kkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM852 (SSM852Q) /CSM/SS/SSM8-C/SSM852Q.Seq.d/                        285   2e-76
SSM834 (SSM834Q) /CSM/SS/SSM8-B/SSM834Q.Seq.d/                        285   2e-76
SSM790 (SSM790Q) /CSM/SS/SSM7-D/SSM790Q.Seq.d/                        285   2e-76
SSM712 (SSM712Q) /CSM/SS/SSM7-A/SSM712Q.Seq.d/                        285   2e-76
SSM626 (SSM626Q) /CSM/SS/SSM6-B/SSM626Q.Seq.d/                        285   2e-76
SSM515 (SSM515Q) /CSM/SS/SSM5-A/SSM515Q.Seq.d/                        285   2e-76
SSM501 (SSM501Q) /CSM/SS/SSM5-A/SSM501Q.Seq.d/                        285   2e-76
SSM491 (SSM491Q) /CSM/SS/SSM4-D/SSM491Q.Seq.d/                        285   2e-76
SSM425 (SSM425Q) /CSM/SS/SSM4-B/SSM425Q.Seq.d/                        285   2e-76
SSM383 (SSM383Q) /CSM/SS/SSM3-D/SSM383Q.Seq.d/                        285   2e-76

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   232  2e-74  2
AC023423|AC023423.5 Homo sapiens clone RP11-430C23, complete sequence.    44  1.2  1
AC122904|AC122904.2 Mus musculus chromosome 1 clone RP23-46H15, complete sequence.    44  1.2  1
AC128298|AC128298.2 Rattus norvegicus clone CH230-399F9, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    42  1.6  4
AC123155|AC123155.5 Rattus norvegicus clone CH230-171I13, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    42  4.6  1
AC103005|AC103005.4 Rattus norvegicus clone CH230-116A15, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    42  4.6  1
AC112773|AC112773.3 Homo sapiens chromosome 3 clone RP11-637N15, WORKING DRAFT SEQUENCE, 21 unordered pieces.    42  4.6  1
AC129804|AC129804.2 Homo sapiens clone RP11-637N16, WORKING DRAFT SEQUENCE, 7 unordered pieces.    42  4.6  1
AC121679|AC121679.4 Rattus norvegicus clone CH230-438M13, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42  4.6  1
AC102662|AC102662.2 Mus musculus clone RP23-144N11, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42  4.6  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 308,995,656

 psg: 0.89  gvh: 0.44  alm: 0.40  top: 0.47  tms: 0.00  mit: 0.53  mip: 0.00
 nuc: 0.51  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane

>> prediction for SSI573 is nuc

>SSI573Z.Seq
----------TAAAAAGAATTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAGTTAAAGA
TGTAATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTTTATAAATTGCCACT
ATAATCAATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTT
TAGTTACTTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGAAAAAAAA
AAACAAAAAAAAAAAGAAAAAGGTTTTTTTTTTAATAATAATAATAATAATAATACAATA
AATTTAAATAAAAATAAAGAATAAACCTTATAGTGGGTTTACCAATTTATAAAAAAAAAA
AAAA