>SSI565 (SSI565Q) /CSM/SS/SSI5-C/SSI565Q.Seq.d/
XXXXXXXXXXACCACTGATAAATGTTTAGTATATACTTGTGATACTAATAAAGGTTGTGA
TTCAAAACCAGTGGTATGTCCAAATAGTGGTAATTGTCAAGTTGGTGTTTGTGATAGTGT
TAAAGGTTGTACACTTGTACCACGTGTTTGTAATTCAACTGCTTTCTGTTTAGTTTCCCA
ATGTGATGAAGCTATTGGTTGTATAACTTTTGAAAAACGTTGCTCACCTGATAATTCAAA
GTGTCAAAGTGGTGTTTGTGTTAATGCAACTGCAACTGAACCTGGTAAATGTAAATCTGT
AGATTATGATCCTAAACCATTTATTTGCCAAACTGGTGCAATAGTTTCAACTGCTGTTGT
TGCTTCTGTTGTTGTAGTAGGTGCTGTTGTTTTAGGTGCTGCAATTTTTGCTGGTAAAAA
AGGATATGATCATTGGAAAGCGAATCAAGGACAAGTATTTGCAAGTAGTAATGCAAATCC
ATTGTATCAACAATCAAATAATGGTGGTGAAAATGCTCTCTTTGAAGCACCTCAATAGTT
TTAAATTTTTACTCTCTCTTTCAAAATCTTATATAATTTCTATTTAAAAATTTTTACTTT
TCAAATCTTTTATTATTTATAAAAATAAAAAAAACTATTTAATTT

---TDKCLVYTCDTNKGCDSKPVVCPNSGNCQVGVCDSVKGCTLVPRVCNSTAFCLVSQC
DEAIGCITFEKRCSPDNSKCQSGVCVNATATEPGKCKSVDYDPKPFICQTGAIVSTAVVA
SVVVVGAVVLGAAIFAGKKGYDHWKANQGQVFASSNANPLYQQSNNGGENALFEAPQ*f*
iftlsfkilynfylkiftfqifyyl*k*kklfn

Frame A:
---plinv*yilvilikvviqnqwyvqivvivklvfvivlkvvhlyhvfviqllsv*fpn
vmkllvv*llknvahliiqsvkvvfvlmqlqlnlvnvnl*imilnhlfaklvq*fqllll
llll**vllf*vlqfllvkkdmiigkrikdkylqvvmqihcinnqimvvkmlslkhlnsf
kfllslsksyiisi*kfllfksfiiyknkknyli


Frame B:
---h**mfsiyl*y**rl*fktsgmsk*w*lsswcl**c*rlytcttcl*fncflfsfpm
**sywlynf*ktllt**fkvskwclc*cncn*tw*m*icrl*s*tiylpnwcnsfncccc
fcccsrcccfrccnfcw*kri*slesesrtsick**cksivstik*ww*kcsl*stsivl
nfyslfqnli*flfknfyfsnlllfikikkti*f


Frame C:
---TDKCLVYTCDTNKGCDSKPVVCPNSGNCQVGVCDSVKGCTLVPRVCNSTAFCLVSQC
DEAIGCITFEKRCSPDNSKCQSGVCVNATATEPGKCKSVDYDPKPFICQTGAIVSTAVVA
SVVVVGAVVLGAAIFAGKKGYDHWKANQGQVFASSNANPLYQQSNNGGENALFEAPQ*f*
iftlsfkilynfylkiftfqifyyl*k*kklfn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI565 (SSI565Q) /CSM/SS/SSI5-C/SSI565Q.Seq.d/                       1209   0.0
SSL643 (SSL643Q) /CSM/SS/SSL6-B/SSL643Q.Seq.d/                       1201   0.0
SSJ816 (SSJ816Q) /CSM/SS/SSJ8-A/SSJ816Q.Seq.d/                       1201   0.0
AHL278 (AHL278Q) /CSM/AH/AHL2-D/AHL278Q.Seq.d/                       1201   0.0
AFN426 (AFN426Q) /CSM/AF/AFN4-B/AFN426Q.Seq.d/                       1201   0.0
AFN401 (AFN401Q) /CSM/AF/AFN4-A/AFN401Q.Seq.d/                       1201   0.0
CHG109 (CHG109Q) /CSM/CH/CHG1-A/CHG109Q.Seq.d/                       1187   0.0
SSB380 (SSB380Q) /CSM/SS/SSB3-D/SSB380Q.Seq.d/                       1185   0.0
AFH708 (AFH708Q) /CSM/AF/AFH7-A/AFH708Q.Seq.d/                       1185   0.0
CHJ128 (CHJ128Q) /CSM/CH/CHJ1-B/CHJ128Q.Seq.d/                       1156   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

G65023|G65023.1 DH0304 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideum STS genomic 5', sequence tagged site.    38  7e-13  5
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    92  2e-11  8
AC017182|AC017182.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    60  4e-05  1
AC007588|AC007588.4 Drosophila melanogaster, chromosome 2R, region 50C-50D, BAC clone BACR30O03, complete sequence.    60  5e-04  3
AE003815|AE003815.3 Drosophila melanogaster 2R  section 35 of 74 of the complete arm, complete sequence.    60  7e-04  2
U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds.    48  0.008  2
AJ250955|AJ250955.1 Drosophila melanogaster mRNA for Sox50E protein (Sox50E gene).    52  0.009  1
AC129683|AC129683.4 Rattus norvegicus clone CH230-291M6, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50  0.034  1
CB102736|CB102736.1 MWV_SQ013@F5 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    50  0.034  1
AC128048|AC128048.3 Rattus norvegicus clone CH230-107I22, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    50  0.034  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                188   1e-46
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   182   7e-45
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   170   3e-41
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   169   5e-41
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                154   2e-36
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                119   7e-26
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                100   6e-20
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    60   5e-08
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    60   5e-08
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    56   1e-06

 psg: 0.75  gvh: 0.53  alm: 0.17  top: 0.70  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSI565 is nuc

>SSI565Z.Seq
----------ACCACTGATAAATGTTTAGTATATACTTGTGATACTAATAAAGGTTGTGA
TTCAAAACCAGTGGTATGTCCAAATAGTGGTAATTGTCAAGTTGGTGTTTGTGATAGTGT
TAAAGGTTGTACACTTGTACCACGTGTTTGTAATTCAACTGCTTTCTGTTTAGTTTCCCA
ATGTGATGAAGCTATTGGTTGTATAACTTTTGAAAAACGTTGCTCACCTGATAATTCAAA
GTGTCAAAGTGGTGTTTGTGTTAATGCAACTGCAACTGAACCTGGTAAATGTAAATCTGT
AGATTATGATCCTAAACCATTTATTTGCCAAACTGGTGCAATAGTTTCAACTGCTGTTGT
TGCTTCTGTTGTTGTAGTAGGTGCTGTTGTTTTAGGTGCTGCAATTTTTGCTGGTAAAAA
AGGATATGATCATTGGAAAGCGAATCAAGGACAAGTATTTGCAAGTAGTAATGCAAATCC
ATTGTATCAACAATCAAATAATGGTGGTGAAAATGCTCTCTTTGAAGCACCTCAATAGTT
TTAAATTTTTACTCTCTCTTTCAAAATCTTATATAATTTCTATTTAAAAATTTTTACTTT
TCAAATCTTTTATTATTTATAAAAATAAAAAAAACTATTTAATTT