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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI563
Library SS
(Link to library)
Clone ID SSI563
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSI563E
(Link to Original site)
Representative DNA sequence 
>SSI563 (SSI563Q) /CSM/SS/SSI5-C/SSI563Q.Seq.d/
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAA
AACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTC
TCATATATAGTACACATTA
sequence update 1998. 1. 9
Translated Amino Acid sequence 
DEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfsee
nisik*is*kiis**nq*sfsyivhi
Translated Amino Acid sequence (All Frames) 
Frame A:
DEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfsee
nisik*is*kiis**nq*sfsyivhi


Frame B:
mnmkir*kp*kqlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn*idgifqrk
tslsnrflkk**vskinkashi*ytl


Frame C:
*i*r*deslrsscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrirlteffrgk
hlyqidflknnklvksiklliysth
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF348 (VSF348Q) /CSM/VS/VSF3-B/VSF348Q.Seq.d/                        513   e-145
VSA155 (VSA155Q) /CSM/VS/VSA1-C/VSA155Q.Seq.d/                        513   e-145
VHP266 (VHP266Q) /CSM/VH/VHP2-C/VHP266Q.Seq.d/                        513   e-145
SSK478 (SSK478Q) /CSM/SS/SSK4-D/SSK478Q.Seq.d/                        513   e-145
SSJ888 (SSJ888Q) /CSM/SS/SSJ8-D/SSJ888Q.Seq.d/                        513   e-145
SSI563 (SSI563Q) /CSM/SS/SSI5-C/SSI563Q.Seq.d/                        513   e-145
SSF159 (SSF159Q) /CSM/SS/SSF1-C/SSF159Q.Seq.d/                        513   e-145
SSE694 (SSE694Q) /CSM/SS/SSE6-D/SSE694Q.Seq.d/                        513   e-145
SSE386 (SSE386Q) /CSM/SS/SSE3-D/SSE386Q.Seq.d/                        513   e-145
SSB749 (SSB749Q) /CSM/SS/SSB7-C/SSB749Q.Seq.d/                        513   e-145
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).   513  e-142  1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.   511  e-141  1
A25789|A25789.1 H.sapiens antigene (72kDa) gene.                  42  0.002  3
AF221531|AF221531.1 Cryptosporidium parvum isolate 428 heat shock protein 70 (HSP70) gene, partial cds.    48  0.004  2
M84019|M84019.1 Hydra magnipapillata heat shock protein 70.1 (hsp70.1) gene, partial cds.    48  0.051  1
AF221532|AF221532.1 Cryptosporidium parvum isolate 351 heat shock protein 70 (HSP70) gene, partial cds.    48  0.051  1
CA302383|CA302383.1 taa14c05.y1 Hydra cDNA library Hydra magnipapillata cDNA 5' similar to SW:HS70_HYDMA Q05944 HEAT SHOCK 70 KD PROTEIN. ;, mRNA sequence.    48  0.051  1
AZ931456|AZ931456.1 474.dhz84d10.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz84d10.s1, DNA sequence.    44  0.18  2
AF221536|AF221536.1 Cryptosporidium wrairi heat shock protein 70 (HSP70) gene, partial cds.    42  0.19  2
AY120916|AY120916.1 Cryptosporidium sp. 1041 70 kDa heat shock protein gene, partial cds.    42  0.19  2
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...    78   1e-13
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...    78   1e-13
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...    44   0.002
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon...    44   0.002
AY035123_1(AY035123|pid:none) Arabidopsis thaliana putative dnaK...    44   0.002
X77199_1(X77199|pid:none) A.thaliana hsc70-1 gene.                     44   0.002
CU928174_28(CU928174|pid:none) Zygosaccharomyces rouxii strain C...    40   0.020
(P24629) RecName: Full=Heat shock cognate 70 kDa protein 1;  &FB...    40   0.020
AY253326_1(AY253326|pid:none) Nicotiana tabacum heat shock prote...    40   0.026
AF035414_1(AF035414|pid:none) Brassica napus heat shock cognate ...    40   0.033
protein update 2009. 7. 8
PSORT 

 psg: 0.75  gvh: 0.29  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.08  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI563 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSI563E
Full length Seq. 
>SSI563E.Seq
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAA
AACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTC
TCATATATAGTACACATTA
Length of full length seq. 259