SSI547
Library SS
(Link to library)
Clone ID SSI547
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSI547F
(Link to Original site)
Representative DNA sequence
>SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/
ATAAAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGAT
AAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCC
TCATATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATT
AAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCAT
AATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATT
GGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAA
TACAAAGAGAATGAACAAAAATTAATTAAACAAAAACATTAAAAAAAAAAAAAAAAAAAA
AATTTAGTTTTTGTATAAAAAAAAAACAAXXXXXXXXXX
sequence update 1998.11.10
Translated Amino Acid sequence
ikiinfk*ikr*KKMTDNWDKEKLAKKAAEGLKNAKNTASSYASGINASKDQLNSNFKNI
KENISSNLNNAKHTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAWKFYEGKK
YKENEQKLIKQKH*kkkkkknlvfv*kkn---


Translated Amino Acid sequence (All Frames)
Frame A:
ikiinfk*ikr*KKMTDNWDKEKLAKKAAEGLKNAKNTASSYASGINASKDQLNSNFKNI
KENISSNLNNAKHTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAWKFYEGKK
YKENEQKLIKQKH*kkkkkknlvfv*kkn---


Frame B:
*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmple*mhqkin*iqiskil
krtfqai*impnillkkmsimlkepvihqryqlldqinslvs*lwvylvyllgnsmkern
tkrmnkn*lnknikkkkkkki*flykkkt---


Frame C:
kny*fqin*kieend**lg*rktc*kssrrfkecqeyciliclwnkcikrsikfkfqky*
rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwfpsfgciwficleil*rkei
qre*tkin*tktlkkkkkkkfsfcikkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK829 (SSK829Q) /CSM/SS/SSK8-B/SSK829Q.Seq.d/ 793 0.0
SSJ861 (SSJ861Q) /CSM/SS/SSJ8-C/SSJ861Q.Seq.d/ 793 0.0
SSJ338 (SSJ338Q) /CSM/SS/SSJ3-B/SSJ338Q.Seq.d/ 793 0.0
SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/ 793 0.0
SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/ 793 0.0
SSH508 (SSH508Q) /CSM/SS/SSH5-A/SSH508Q.Seq.d/ 793 0.0
SSG891 (SSG891Q) /CSM/SS/SSG8-D/SSG891Q.Seq.d/ 793 0.0
SSF517 (SSF517Q) /CSM/SS/SSF5-A/SSF517Q.Seq.d/ 793 0.0
SSF340 (SSF340Q) /CSM/SS/SSF3-B/SSF340Q.Seq.d/ 793 0.0
SSE771 (SSE771Q) /CSM/SS/SSE7-C/SSE771Q.Seq.d/ 793 0.0

own update 2004. 7.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AV234950|AV234950.1 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732401F15, 3' end partial sequence. 52 0.006 1
AF071814|AF071814.1 Streptococcus pneumoniae strain WU2 PspA (pspA) gene, partial cds. 52 0.006 1
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 36 0.012 9
AF396436|AF396436.1 Tetrahymena thermophila strain SB210 mitochondrion, complete genome. 30 0.015 7
BX561092|BX561092.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse53g08_p1c. 50 0.024 1
AZ522713|AZ522713.1 210PbA05 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence. 42 0.055 2
AC015646|AC015646.5 Homo sapiens chromosome 8 clone RP11-46B18 map 8, WORKING DRAFT SEQUENCE, 12 ordered pieces. 32 0.057 9
BM164672|BM164672.1 EST567195 PyBS Plasmodium yoelii yoelii cDNA clone PYCLX63 5' end, mRNA sequence. 42 0.073 2
AF081801|AF081801.1 Dictyostelium discoideum developmental protein DG1098 (DG1098) gene, partial cds. 38 0.075 3
AP001118|AP001118.1 Buchnera sp. APS genomic DNA, complete sequence, segment 1/2. 38 0.11 11
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017308_577(AE017308|pid:none) Mycoplasma mobile 163K complete ... 36 0.47
(Q80WK7) RecName: Full=Equilibrative nucleoside transporter 3; A... 35 0.61
BC078678_1(BC078678|pid:none) Rattus norvegicus solute carrier f... 35 0.61
AL844507_240(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 35 0.79
EF145887_1(EF145887|pid:none) Populus trichocarpa clone WS0114_A... 33 3.0
CP000768_40(CP000768|pid:none) Campylobacter jejuni subsp. doyle... 33 3.0
AC116305_7(AC116305|pid:none) Dictyostelium discoideum chromosom... 33 3.9
AM458473_6(AM458473|pid:none) Vitis vinifera contig VV78X094999.... 33 3.9
AL844505_83(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 33 3.9
(Q14JW6) RecName: Full=Lipid A export ATP-binding/permease prote... 32 5.1
protein update 2009. 6.13
PSORT

psg: 0.58 gvh: 0.40 alm: 0.31 top: 0.47 tms: 0.07 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: mitochondrial
24.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: Golgi
12.0 %: endoplasmic reticulum
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SSI547 is mit

5' end seq. ID SSI547F
5' end seq.
>SSI547F.Seq
ATAAAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGAT
AAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCC
TCATATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATT
AAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCAT
AATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATT
GGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAA
TACAAAGAGAATGAACAAAAATTAATTAAACAAAAACATTAAAAAAAAAAAAAAAAAAAA
AATTTAGTTTTTGTATAAAAAAAAAACAA----------
Length of 5' end seq. 449
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -