>SSI533 (SSI533Q) /CSM/SS/SSI5-B/SSI533Q.Seq.d/
XXXXXXXXXXGAATAGCATACGTCCAAACTCTAATAGAGAGCAAGAAGAGTTACCATTCT
CTGACAATACTCGTTTCTCTCCATTCAGACCAGTTCGTCCAAAAATTCAAAAGACTTCGG
TTATCGATGGCGCTTCGTCCGGTTACTCCAAGAGAAAGAGAAGTCGTGCAGTTGTTTCAA
TTCAACCTGGTAATGGTTCAATACTCATAAATGGTCGTACCCTTTTAGATTATTTCCCAT
CGATTTCCTACAGAGATAATGTAGTTCAACCATTGGTTATCACTGAAACTCTCACAAAAT
GGGATGTCTCAATTAGAGCTTTCGGTGGTGGTCTCAAAGGTCAATCTGAAGCTGCTCGTC
GTGCACTAGGTTTCTCTTTAGTAAATTATGATCTCGGTTATAGACCAGCACTTAAAATCG
CTGGTCCTCTCAAGAATGATATTCGTAAAGTTGAAAGAAAGAAACCAGGTTTACTCAAAG
CAAGAAAGAGATTCCCATTGGTCAAACGTTAAAATATTTTTTTTATTATTATTTTATTTA
TTATTTAATTTAAAAATAAAAATAAATAAATAAATAAATAAAAAAA

---NSIRPNSNREQEELPFSDNTRFSPFRPVRPKIQKTSVIDGASSGYSKRKRSRAVVSI
QPGNGSILINGRTLLDYFPSISYRDNVVQPLVITETLTKWDVSIRAFGGGLKGQSEAARR
ALGFSLVNYDLGYRPALKIAGPLKNDIRKVERKKPGLLKARKRFPLVKR*niffiiilfi
i*fknknk*ink*k

Frame A:
---NSIRPNSNREQEELPFSDNTRFSPFRPVRPKIQKTSVIDGASSGYSKRKRSRAVVSI
QPGNGSILINGRTLLDYFPSISYRDNVVQPLVITETLTKWDVSIRAFGGGLKGQSEAARR
ALGFSLVNYDLGYRPALKIAGPLKNDIRKVERKKPGLLKARKRFPLVKR*niffiiilfi
i*fknknk*ink*k


Frame B:
---iayvqtlieskksyhsltilvslhsdqfvqkfkrlrlsmalrpvtprerevvqlfqf
nlvmvqys*mvvpf*iishrfpteim*fnhwlslklsqngmsqlelsvvvskvnlkllvv
h*vsl**imisvidqhlkslvlsrmifvklkernqvyskqerdshwsnvkifflllfyll
fnlkikink*inkk


Frame C:
---*htskl**rarrvtil*qysflsiqtsssknskdfgyrwrfvrllqekekscscfns
tw*wfnthkwsypfrlfpidflqr*csstigyh*nshkmgcln*sfrwwsqrsi*scssc
trflfskl*srl*tst*nrwssqe*ys*s*kketrftqskkeipigqtlkyffyyyfiyy
li*k*k*ink*ikk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI533 (SSI533Q) /CSM/SS/SSI5-B/SSI533Q.Seq.d/                        999   0.0
VSF344 (VSF344Q) /CSM/VS/VSF3-B/VSF344Q.Seq.d/                         36   0.58
VSF276 (VSF276Q) /CSM/VS/VSF2-D/VSF276Q.Seq.d/                         36   0.58
VSD813 (VSD813Q) /CSM/VS/VSD8-A/VSD813Q.Seq.d/                         36   0.58
VSC874 (VSC874Q) /CSM/VS/VSC8-D/VSC874Q.Seq.d/                         36   0.58
VFL763 (VFL763Q) /CSM/VF/VFL7-C/VFL763Q.Seq.d/                         36   0.58
VFI628 (VFI628Q) /CSM/VF/VFI6-B/VFI628Q.Seq.d/                         36   0.58
VFH565 (VFH565Q) /CSM/VF/VFH5-C/VFH565Q.Seq.d/                         36   0.58
VFB663 (VFB663Q) /CSM/VF/VFB6-C/VFB663Q.Seq.d/                         36   0.58
SSL784 (SSL784Q) /CSM/SS/SSL7-D/SSL784Q.Seq.d/                         36   0.58

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC132486|AC132486.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone P0473H02, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.    42  0.26  2
AC130730|AC130730.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone P0681D04, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.    42  0.30  2
AV813293|AV813293.1 Arabidopsis thaliana cDNA clone:RAFL09-78-A03, 3'-end.    38  0.89  2
AV790335|AV790335.1 Arabidopsis thaliana cDNA clone:RAFL06-87-P09, 3'-end.    38  0.89  2
AV816181|AV816181.1 Arabidopsis thaliana cDNA clone:RAFL09-89-K18, 3'-end.    38  0.92  2
AI998605|AI998605.1 701546307 A. thaliana, Columbia Col-0, rosette-2 Arabidopsis thaliana cDNA clone 701546307, mRNA sequence.    38  1.1  2
AV543297|AV543297.1 Arabidopsis thaliana cDNA clone:RZ198h10F, 3' end.    38  1.3  2
AL929520|AL929520.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-134D13.    44  1.9  1
AC120144|AC120144.4 Mus musculus clone RP24-427K8, WORKING DRAFT SEQUENCE, 7 unordered pieces.    44  1.9  1
BT006583|BT006583.1 Arabidopsis thaliana At3g49080 mRNA, complete cds.    38  2.6  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK100166_1(AK100166|pid:none) Oryza sativa Japonica Group cDNA c...   112   7e-24
AP008213_1850(AP008213|pid:none) Oryza sativa (japonica cultivar...   112   7e-24
CP001577_119(CP001577|pid:none) Micromonas sp. RCC299 chromosome...   112   1e-23
CP000591_143(CP000591|pid:none) Ostreococcus lucimarinus CCE9901...   107   3e-22
CP001100_529(CP001100|pid:none) Chloroherpeton thalassium ATCC 3...   104   2e-21
AM441512_2(AM441512|pid:none) Vitis vinifera contig VV78X024731....   104   2e-21
(Q8R7Y9) RecName: Full=30S ribosomal protein S9;  &AE008691_2083...   103   3e-21
(Q04G51) RecName: Full=30S ribosomal protein S9;  &CP000411_566(...   103   3e-21
AP007164_81(AP007164|pid:none) Aspergillus oryzae RIB40 genomic ...   103   3e-21
CR954211_146(CR954211|pid:none) Ostreococcus tauri strain OTTH05...   103   4e-21

 psg: 0.52  gvh: 0.30  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.02
 nuc: 0.14  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for SSI533 is nuc

>SSI533Z.Seq
----------GAATAGCATACGTCCAAACTCTAATAGAGAGCAAGAAGAGTTACCATTCT
CTGACAATACTCGTTTCTCTCCATTCAGACCAGTTCGTCCAAAAATTCAAAAGACTTCGG
TTATCGATGGCGCTTCGTCCGGTTACTCCAAGAGAAAGAGAAGTCGTGCAGTTGTTTCAA
TTCAACCTGGTAATGGTTCAATACTCATAAATGGTCGTACCCTTTTAGATTATTTCCCAT
CGATTTCCTACAGAGATAATGTAGTTCAACCATTGGTTATCACTGAAACTCTCACAAAAT
GGGATGTCTCAATTAGAGCTTTCGGTGGTGGTCTCAAAGGTCAATCTGAAGCTGCTCGTC
GTGCACTAGGTTTCTCTTTAGTAAATTATGATCTCGGTTATAGACCAGCACTTAAAATCG
CTGGTCCTCTCAAGAATGATATTCGTAAAGTTGAAAGAAAGAAACCAGGTTTACTCAAAG
CAAGAAAGAGATTCCCATTGGTCAAACGTTAAAATATTTTTTTTATTATTATTTTATTTA
TTATTTAATTTAAAAATAAAAATAAATAAATAAATAAATAAAAAAA