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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI531
Library SS
(Link to library)
Clone ID SSI531
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11021-1
Original site URL
Representative seq. ID SSI531E
(Link to Original site)
Representative DNA sequence 
>SSI531 (SSI531Q) /CSM/SS/SSI5-B/SSI531Q.Seq.d/
AGCTACTACCAATTGGTATCGATATTTGTTTTTTCATGGGCATATCCTATGTTTATCCCA
TCATGGGTTAATGAAAAGAAAGACGGGGTGTCGGTGAACAGGGCTGTGTGGTCGGCCGGG
GTGTTCTCCTGGTTCGGGTACTTGTTCATCGGGCTGTTGGGGGCCTGTGCTTATGGGTCG
TTGGGCAGTGACAATATACTAAATCTTATGGGGAGCATTAAGTACCCATTGGTGACGAGA
ATCGCTAGTTACCTATTCAGTTTAACCGTTATCGCACCTGGTATCCCTATTTGTTTCATC
ACTGTGCGTTATAATCTATACGTGGGCTATATTTGTGGGAAGAAAGCATCCTACTTTTTC
GGTGTTATAGCTCCTTGGTTCTTTGCTTTTGTATTCTGTAATCAAAAAATCTTTGCTGAC
CTCTTAACTTGGTCTTCATTAATTTTAAATACAATTATAAATTTTTTAGTACCTTTTGCA
CTCTATCTAAAAGCTTCCTCAAAAATTAAATCTTTAAATCCTGATCATCAATCAATAATT
AATCCATATTCAAAATATTTACCTTCAAAATATCATAGATTATTAACTTGGTTAATATTA
TCATCAGTTATTATAATATCAATAATTCAAATAGTTTATGATTCTTATAAATCTTCAAAA
GGATTTAATCCATTAGATTAAAAATATTAAATTTTAAAAAAAAAAAAAA
sequence update 1999. 6.22
Translated Amino Acid sequence 
SYYQLVSIFVFSWAYPMFIPSWVNEKKDGVSVNRAVWSAGVFSWFGYLFIGLLGACAYGS
LGSDNILNLMGSIKYPLVTRIASYLFSLTVIAPGIPICFITVRYNLYVGYICGKKASYFF
GVIAPWFFAFVFCNQKIFADLLTWSSLILNTIINFLVPFALYLKASSKIKSLNPDHQSII
NPYSKYLPSKYHRLLTWLILSSVIIISIIQIVYDSYKSSKGFNPLD*ky*ilkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
SYYQLVSIFVFSWAYPMFIPSWVNEKKDGVSVNRAVWSAGVFSWFGYLFIGLLGACAYGS
LGSDNILNLMGSIKYPLVTRIASYLFSLTVIAPGIPICFITVRYNLYVGYICGKKASYFF
GVIAPWFFAFVFCNQKIFADLLTWSSLILNTIINFLVPFALYLKASSKIKSLNPDHQSII
NPYSKYLPSKYHRLLTWLILSSVIIISIIQIVYDSYKSSKGFNPLD*ky*ilkkkk


Frame B:
attnwyrylffhghilclshhglmkrktgcr*tglcgrpgcspgsgtcssgcwgpvlmgr
wavtiy*ilwgalsthw*reslvtysv*plshlvslfvsslcviiytwaifvgrkhptfs
vl*llgslllysvikksllts*lglh*f*iql*if*yllhsi*klpqklnl*iliinq*l
ihiqniylqniidy*lg*yyhqll*yq*fk*fmilinlqkdlih*iknikf*kkkk


Frame C:
llpigidicffmgisyvypimg**kerrgvgeqgcvvgrgvllvrvlvhravgglclwvv
gq*qytksygeh*vpigdenr*lpiqfnryrtwypylfhhcal*sirglylweesillfr
cysslvlcfcil*sknlc*plnlvfinfkynykffstfctlsksflkn*ifks*ssinn*
sifkiftfkis*iinlvniiisyyninnsnsl*fl*ifkri*sirlkilnfkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI531 (SSI531Q) /CSM/SS/SSI5-B/SSI531Q.Seq.d/                       1378   0.0
AFK617 (AFK617Q) /CSM/AF/AFK6-A/AFK617Q.Seq.d/                       1328   0.0
SLF377 (SLF377Q) /CSM/SL/SLF3-D/SLF377Q.Seq.d/                       1082   0.0
AHF639 (AHF639Q) /CSM/AH/AHF6-B/AHF639Q.Seq.d/                        850   0.0
SSK809 (SSK809Q) /CSM/SS/SSK8-A/SSK809Q.Seq.d/                         42   0.011
SHI331 (SHI331Q) /CSM/SH/SHI3-B/SHI331Q.Seq.d/                         42   0.011
SHA265 (SHA265Q) /CSM/SH/SHA2-C/SHA265Q.Seq.d/                         42   0.011
CHN864 (CHN864Q) /CSM/CH/CHN8-C/CHN864Q.Seq.d/                         42   0.011
AHA770 (AHA770Q) /CSM/AH/AHA7-C/AHA770Q.Seq.d/                         42   0.011
CFH668 (CFH668Q) /CSM/CF/CFH6-C/CFH668Q.Seq.d/                         40   0.045
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX356468|AX356468.1 Sequence 102 from Patent WO0181622.           38  0.088  4
AX346833|AX346833.1 Sequence 1904 from Patent WO0200928.          38  0.088  4
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    40  0.11  6
AC108719|AC108719.3 Homo sapiens 3 BAC RP11-247J22 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  0.13  3
AX346009|AX346009.1 Sequence 1080 from Patent WO0200928.          38  0.30  2
AX344285|AX344285.1 Sequence 132 from Patent WO0200926.           38  0.30  2
AC027755|AC027755.2 Homo sapiens chromosome 3 clone RP11-594C8 map 3, WORKING DRAFT SEQUENCE, 15 unordered pieces.    44  0.36  4
AL360354|AL360354.1 Plasmodium vivax telomeric YAC clone, complete finished sequence.    30  0.55  7
AX344565|AX344565.1 Sequence 16 from Patent WO0200932.            32  0.59  11
AE017147|AE017147.1 Helicobacter hepaticus ATCC 51449 section 4 of 6 of the complete genome.    34  0.62  8
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM910996_479(AM910996|pid:none) Plasmodium knowlesi strain H chr...    94   5e-18
CP001141_340(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1...    87   7e-16
(A9MBP1) RecName: Full=UPF0078 membrane protein BCAN_B0602;  &(P...    42   0.018
(A5VUT3) RecName: Full=UPF0078 membrane protein BOV_A0566;  &CP0...    42   0.018
(Q2YKM0) RecName: Full=UPF0078 membrane protein BAB2_0639;  &(Q5...    40   0.054
(Q8YC64) RecName: Full=UPF0078 membrane protein BMEII0668;  &AC3...    40   0.070
AE016828_1324(AE016828|pid:none) Coxiella burnetii RSA 493, comp...    38   0.35
CP001019_437(CP001019|pid:none) Coxiella burnetii CbuG_Q212, com...    38   0.35
CP000698_568(CP000698|pid:none) Geobacter uraniireducens Rf4, co...    37   0.59
(O74327) RecName: Full=Putative amino acid permease C1685.07c;  ...    37   0.59
protein update 2009. 7. 8
PSORT 

 psg: 0.96  gvh: 0.54  alm: 0.24  top: 0.47  tms: 0.33  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI531 is end
5' end seq. ID SSI531F
5' end seq. 
>SSI531F.Seq
AGCTACTACCAATTGGTATCGATATTTGTTTTTTCATGGGCATATCCTATGTTTATCCCA
TCATGGGTTAATGAAAAGAAAGACGGGGTGTCGGTGAACAGGGCTGTGTGGTCGGCCGGG
GTGTTCTCCTGGTTCGGGTACTTGTTCATCGGGCTGTTGGGGGCCTGTGCTTATGGGTCG
TTGGGCAGTGACAATATACTAAATCTTATGGGGAGCATTAAGTACCCATTGGTGACGAGA
ATCGCTAGTTACCTATTCAGTTTAACCGTTATCGCACCTGGTATCCCTATTTGTTTCATC
ACTGTGCGTTATAATCTATACGTGGGCTATATTTGTGGGAAGAAAGCATCCTACTTTTTC
GGTGTTATAGCTCCTTGGTTCTTTGCTTTTGTATTCTGTAATCAAAAAATCTTTGCTGAC
CTCTTAACTTGGTCTTCATTAATTTTAAATACAATTATAAATTTTTTAGTACCTTTTGCA
CTCTATCTAAAAGCTTCC----------
Length of 5' end seq. 498
3' end seq. ID SSI531Z
3' end seq. 
>SSI531Z.Seq
----------CGCTAGTTACCTATTCAGTTTAACCGTTATCGCACCTGGTATCCCTATTT
GTTTCATCACTGTGCGTTATAATCTATACGTGGGCTATATTTGTGGGAAGAAAGCATCCT
ACTTTTTCGGTGTTATAGCTCCTTGGTTCTTTGCTTTTGTATTCTGTAATCAAAAAATCT
TTGCTGACCTCTTAACTTGGTCTTCATTAATTTTAAATACAATTATAAATTTTTTAGTAC
CTTTTGCACTCTATCTAAAAGCTTCCTCAAAAATTAAATCTTTAAATCCTGATCATCAAT
CAATAATTAATCCATATTCAAAATATTTACCTTCAAAATATCATAGATTATTAACTTGGT
TAATATTATCATCAGTTATTATAATATCAATAATTCAAATAGTTTATGATTCTTATAAAT
CTTCAAAAGGATTTAATCCATTAGATTAAAAATATTAAATTTTAAAAAAAAAAAAAA
Length of 3' end seq. 467
Connected seq. ID SSI531P
Connected seq. 
>SSI531P.Seq
AGCTACTACCAATTGGTATCGATATTTGTTTTTTCATGGGCATATCCTATGTTTATCCCA
TCATGGGTTAATGAAAAGAAAGACGGGGTGTCGGTGAACAGGGCTGTGTGGTCGGCCGGG
GTGTTCTCCTGGTTCGGGTACTTGTTCATCGGGCTGTTGGGGGCCTGTGCTTATGGGTCG
TTGGGCAGTGACAATATACTAAATCTTATGGGGAGCATTAAGTACCCATTGGTGACGAGA
ATCGCTAGTTACCTATTCAGTTTAACCGTTATCGCACCTGGTATCCCTATTTGTTTCATC
ACTGTGCGTTATAATCTATACGTGGGCTATATTTGTGGGAAGAAAGCATCCTACTTTTTC
GGTGTTATAGCTCCTTGGTTCTTTGCTTTTGTATTCTGTAATCAAAAAATCTTTGCTGAC
CTCTTAACTTGGTCTTCATTAATTTTAAATACAATTATAAATTTTTTAGTACCTTTTGCA
CTCTATCTAAAAGCTTCC----------CGCTAGTTACCTATTCAGTTTAACCGTTATCG
CACCTGGTATCCCTATTTGTTTCATCACTGTGCGTTATAATCTATACGTGGGCTATATTT
GTGGGAAGAAAGCATCCTACTTTTTCGGTGTTATAGCTCCTTGGTTCTTTGCTTTTGTAT
TCTGTAATCAAAAAATCTTTGCTGACCTCTTAACTTGGTCTTCATTAATTTTAAATACAA
TTATAAATTTTTTAGTACCTTTTGCACTCTATCTAAAAGCTTCCTCAAAAATTAAATCTT
TAAATCCTGATCATCAATCAATAATTAATCCATATTCAAAATATTTACCTTCAAAATATC
ATAGATTATTAACTTGGTTAATATTATCATCAGTTATTATAATATCAATAATTCAAATAG
TTTATGATTCTTATAAATCTTCAAAAGGATTTAATCCATTAGATTAAAAATATTAAATTT
TAAAAAAAAAAAAAA
Length of connected seq. 965
Full length Seq ID SSI531E
Full length Seq. 
>SSI531E.Seq
AGCTACTACCAATTGGTATCGATATTTGTTTTTTCATGGGCATATCCTATGTTTATCCCA
TCATGGGTTAATGAAAAGAAAGACGGGGTGTCGGTGAACAGGGCTGTGTGGTCGGCCGGG
GTGTTCTCCTGGTTCGGGTACTTGTTCATCGGGCTGTTGGGGGCCTGTGCTTATGGGTCG
TTGGGCAGTGACAATATACTAAATCTTATGGGGAGCATTAAGTACCCATTGGTGACGAGA
ATCGCTAGTTACCTATTCAGTTTAACCGTTATCGCACCTGGTATCCCTATTTGTTTCATC
ACTGTGCGTTATAATCTATACGTGGGCTATATTTGTGGGAAGAAAGCATCCTACTTTTTC
GGTGTTATAGCTCCTTGGTTCTTTGCTTTTGTATTCTGTAATCAAAAAATCTTTGCTGAC
CTCTTAACTTGGTCTTCATTAATTTTAAATACAATTATAAATTTTTTAGTACCTTTTGCA
CTCTATCTAAAAGCTTCCTCAAAAATTAAATCTTTAAATCCTGATCATCAATCAATAATT
AATCCATATTCAAAATATTTACCTTCAAAATATCATAGATTATTAACTTGGTTAATATTA
TCATCAGTTATTATAATATCAATAATTCAAATAGTTTATGATTCTTATAAATCTTCAAAA
GGATTTAATCCATTAGATTAAAAATATTAAATTTTAAAAAAAAAAAAAA
Length of full length seq. 709