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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI527
Library SS
(Link to library)
Clone ID SSI527
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16209-1
Original site URL
Representative seq. ID SSI527F
(Link to Original site)
Representative DNA sequence 
>SSI527 (SSI527Q) /CSM/SS/SSI5-B/SSI527Q.Seq.d/
ATCTATATCACATATCACATATCCATATTCTATGCATATTATCAATAGTGGAATGAATTT
TAGTTTATATTGGTCAATCTGTGAGAAAATTTAAATAATCAAATAATAGAATGAATATTA
ATCAAAATTATTATTATTATTATATATAAATGATTGATTTTTGATAATTGATAATTGATA
AATAACACACAATGAACAATTTAGCGTCTACGTTACTCTTATAAAAGATGACTCAATTCC
CAGCTGCATTAAACCCACATCAAGATGATATCTTAAAGATGTTAGCTTGTCAAACCCATC
TCGGTGGTAACAACGTTGATGTTGAAATGGAATCATACACCTGGAAGAGAAAGGATAATG
GTCACTTCATCATCAATCTTGCCAAAACTTGGGAAAAGATTCAATTAGCTGCTCGTGTCA
TCGTTGCTATTGAAAACCCAGCTGATATCTCAGTTATCTCTGCCAAACCATTGGGTCAAC
GTGCCGTCCTCAAATTCGCCAACTTTATCGGTGCCACCGCTTTCTCTGGTCGTTTCACCC
CAGGTACCTTTACCAATCAAATCCAATCAAAATTCACTGAACCAAGACTTTTGATTGTTG
CTGATCCATTATTAGATAAACAACCATTAATGGAAGCTTCATACGTAAATATCCCAACCA
TCGCTCTCTGTGATACCACCTCATGXXXXXXXXXX
sequence update 1998.11.10
Translated Amino Acid sequence 
lyhishihilcilsive*ilvyigqsvrkfk*snnrmninqnyyyyyi*midf**liidk
*htmnnlastlll*KMTQFPAALNPHQDDILKMLACQTHLGGNNVDVEMESYTWKRKDNG
HFIINLAKTWEKIQLAARVIVAIENPADISVISAKPLGQRAVLKFANFIGATAFSGRFTP
GTFTNQIQSKFTEPRLLIVADPLLDKQPLMEASYVNIPTIALCDTTS---
Translated Amino Acid sequence (All Frames) 
Frame A:
iyityhisifyayyq*wnef*filvnl*enlnnqiie*ilikiiiiiiyk*lifdn**li
nntq*ti*rlrysykr*lnsqlh*thikmis*rc*lvkpisvvttlmlkwnhtpgrerim
vtsssilpklgkrfn*llvsslllktqlisqlslpnhwvnvpssnsptlsvpplslvvsp
qvplpiksnqnslnqdf*lllihy*innh*wklht*isqpslsvipph---


Frame B:
sishitypysmhiinsgmnfslywsiceki*iik**ney*sklllllyind*fliidn**
ithneqfsvyvtlikddsipscikptsr*ylkdvslsnpsrw*qr*c*ngiihleekg*w
slhhqscqnlgkdsiscschrcy*kps*ylsylcqtigstcrpqirqlyrchrflwsfhp
rylyqsnpikih*tktfdcc*siir*ttingsfirkypnhrsl*yhl---


Frame C:
lyhishihilcilsive*ilvyigqsvrkfk*snnrmninqnyyyyyi*midf**liidk
*htmnnlastlll*KMTQFPAALNPHQDDILKMLACQTHLGGNNVDVEMESYTWKRKDNG
HFIINLAKTWEKIQLAARVIVAIENPADISVISAKPLGQRAVLKFANFIGATAFSGRFTP
GTFTNQIQSKFTEPRLLIVADPLLDKQPLMEASYVNIPTIALCDTTS---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI527 (SSI527Q) /CSM/SS/SSI5-B/SSI527Q.Seq.d/                        993   0.0
VHA158 (VHA158Q) /CSM/VH/VHA1-C/VHA158Q.Seq.d/                        954   0.0
FC-BL17 (FC-BL17Q) /CSM/FC/FC-BL/FC-BL17Q.Seq.d/                      948   0.0
FC-511 (FC-511Q) /CSM/CG/CG-FC/FC-511Q.Seq.d/                         948   0.0
SLH669 (SLH669Q) /CSM/SL/SLH6-C/SLH669Q.Seq.d/                        942   0.0
VFN818 (VFN818Q) /CSM/VF/VFN8-A/VFN818Q.Seq.d/                        938   0.0
VHH685 (VHH685Q) /CSM/VH/VHH6-D/VHH685Q.Seq.d/                        922   0.0
FC-BS24 (FC-BS24Q) /CSM/FC/FC-BS/FC-BS24Q.Seq.d/                      797   0.0
VSG286 (VSG286Q) /CSM/VS/VSG2-D/VSG286Q.Seq.d/                        664   0.0
VSC141 (VSC141Q) /CSM/VS/VSC1-B/VSC141Q.Seq.d/                         56   7e-07
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM438323|BM438323.1 IpLvr01076 Liver cDNA library Ictalurus punctatus cDNA 5' similar to Ribosomal protein Sa, mRNA sequence.    42  7e-08  3
AL113982|AL113982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    42  1e-07  3
CA330308|CA330308.1 hab04f02.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362642 5' similar to SW:RSP4_CHICK P50890 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    46  3e-06  2
CA588978|CA588978.1 hab52c11.y1 Fugu UT7 adult skin Takifugu rubripes cDNA clone IMAGE:6352125 5' similar to SW:RSP4_CHICK P50890 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    46  3e-06  2
BU807901|BU807901.1 haa19a03.y2 Fugu UT11 adult fin Takifugu rubripes cDNA clone 6343972 5' similar to SW:RSP4_CHICK P50890 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    46  3e-06  2
CA846397|CA846397.1 hac08e06.y1 Fugu hgmpE adult gonad Takifugu rubripes cDNA clone IMAGE:6357586 5' similar to SW:RSP4_CHICK P50890 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    46  4e-06  2
CA847241|CA847241.1 hac13b05.y1 Fugu hgmpE adult gonad Takifugu rubripes cDNA clone IMAGE:6357825 5' similar to SW:RSP4_CHICK P50890 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    46  4e-06  2
BQ096846|BQ096846.1 IfHdk00487 Ictalurus furcatus head kidney cDNA library Ictalurus furcatus cDNA 5' similar to Ribosomal protein Sa (laminin receptor 1), mRNA sequence.    46  4e-06  2
CA846458|CA846458.1 hac09g06.y1 Fugu hgmpE adult gonad Takifugu rubripes cDNA clone IMAGE:6357683 5' similar to SW:RSP4_CHICK P50890 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    46  4e-06  2
CA844554|CA844554.1 hac15h08.y1 Fugu hgmpE adult gonad Takifugu rubripes cDNA clone IMAGE:6358143 5' similar to SW:RSP4_CHICK P50890 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    46  4e-06  2
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT058861_1(BT058861|pid:none) Salmo salar clone ssal-rgf-508-156...   202   8e-51
BT043675_1(BT043675|pid:none) Salmo salar clone HM5_1686 ribosom...   202   8e-51
BT049047_1(BT049047|pid:none) Salmo salar clone ssal-rgb2-530-26...   202   8e-51
EF103361_1(EF103361|pid:none) Haliotis discus discus raminin rec...   202   8e-51
AY550956_1(AY550956|pid:none) Sparus aurata 40S ribosomal protei...   200   3e-50
EU558331_1(EU558331|pid:none) Phoronis muelleri putative 40S rib...   199   7e-50
BT075663_1(BT075663|pid:none) Osmerus mordax clone omor-rgc-515-...   199   9e-50
DQ213582_1(DQ213582|pid:none) Taeniopygia guttata clone 0058P003...   198   1e-49
J02870_1(J02870|pid:none) Mouse laminin receptor mRNA, complete ...   198   1e-49
(Q4GWZ2) RecName: Full=40S ribosomal protein SA; AltName: Full=L...   197   2e-49
protein update 2009. 6.13
PSORT 

 psg: 0.86  gvh: 0.43  alm: 0.42  top: 0.40  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for SSI527 is cyt
5' end seq. ID SSI527F
5' end seq. 
>SSI527F.Seq
ATCTATATCACATATCACATATCCATATTCTATGCATATTATCAATAGTGGAATGAATTT
TAGTTTATATTGGTCAATCTGTGAGAAAATTTAAATAATCAAATAATAGAATGAATATTA
ATCAAAATTATTATTATTATTATATATAAATGATTGATTTTTGATAATTGATAATTGATA
AATAACACACAATGAACAATTTAGCGTCTACGTTACTCTTATAAAAGATGACTCAATTCC
CAGCTGCATTAAACCCACATCAAGATGATATCTTAAAGATGTTAGCTTGTCAAACCCATC
TCGGTGGTAACAACGTTGATGTTGAAATGGAATCATACACCTGGAAGAGAAAGGATAATG
GTCACTTCATCATCAATCTTGCCAAAACTTGGGAAAAGATTCAATTAGCTGCTCGTGTCA
TCGTTGCTATTGAAAACCCAGCTGATATCTCAGTTATCTCTGCCAAACCATTGGGTCAAC
GTGCCGTCCTCAAATTCGCCAACTTTATCGGTGCCACCGCTTTCTCTGGTCGTTTCACCC
CAGGTACCTTTACCAATCAAATCCAATCAAAATTCACTGAACCAAGACTTTTGATTGTTG
CTGATCCATTATTAGATAAACAACCATTAATGGAAGCTTCATACGTAAATATCCCAACCA
TCGCTCTCTGTGATACCACCTCATG----------
Length of 5' end seq. 685
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -