>SSI516 (SSI516Q) /CSM/SS/SSI5-A/SSI516Q.Seq.d/
AACAAATTAGAAGAGTTGAAACATTAACTAATCATTTATGTTCATCATCAAATGAAAGTT
TTTATCTCTCATCAAATAATACAGATGCATCATTAAGAGAACTTGTTATTAGAGCACAAG
CTCAAAGAAATGCAAGAAATACTAAAACTCTTAAAGGTTTAGAAGAGATGAAAACTTTAG
TTGGTAAAGAGATTGGTACAAGTGAATACTTTAAAATCACTCAAGATCGTGTAAACTCTT
TTGCTGAATCAACTGGTGATTTCCAATGGATTCATATTGATCCAGAAAGAGCTAAATCTG
AAAGTCCTTTTGGTGGTCCAATTGCACATGGTTTCTTAACATTATCATTAGCACCAATGT
TTGCAGAAGAAGTTATGCCAAATGTTGAAGGTATTAAATATGGTGTAAATTATGGTTTCA
ATAAAATTAGATTCTTATCGCCAGTACCAGTCGATGGTAATTTAAGATGTAAATTTGAAT
TACAAGAATTAACACCAGTTTCAGGTGGTGCTCAAGCTGTTATTAAATTAACTTTTGAAG
TTGAAGATCAACCAAAAGCTTCTGCAATTTGTGAATGGATTATTCGTTACTATGXXXXXX
XXXX

QIRRVETLTNHLCSSSNESFYLSSNNTDASLRELVIRAQAQRNARNTKTLKGLEEMKTLV
GKEIGTSEYFKITQDRVNSFAESTGDFQWIHIDPERAKSESPFGGPIAHGFLTLSLAPMF
AEEVMPNVEGIKYGVNYGFNKIRFLSPVPVDGNLRCKFELQELTPVSGGAQAVIKLTFEV
EDQPKASAICEWIIRYY---

Frame A:
nkleelkh*liiyvhhqmkvfishqiiqmhh*enlllehklkemqeilkllkv*kr*kl*
lvkrlvqvntlkslkiv*tlllnqlvisngfiliqkelnlkvllvvqlhmvs*hyh*hqc
lqkklcqmlkvlnmv*imvsikldsyrqyqsmvi*dvnlnykn*hqfqvvlkllln*llk
lkinqkllqfvnglfvt---


Frame B:
tn*ks*nin*sfmfiik*kflslik*yrciikrtcy*stsskkckky*ns*rfrrdenfs
w*rdwyk*il*nhsrscklfc*inw*fpmdsy*srks*i*ksfwwsnctwflniiistnv
crrsyakc*ry*iwcklwfq*n*iliastsrw*fkm*i*itrintsfrwcsscy*inf*s
*rstksfcnl*mdysll---


Frame C:
QIRRVETLTNHLCSSSNESFYLSSNNTDASLRELVIRAQAQRNARNTKTLKGLEEMKTLV
GKEIGTSEYFKITQDRVNSFAESTGDFQWIHIDPERAKSESPFGGPIAHGFLTLSLAPMF
AEEVMPNVEGIKYGVNYGFNKIRFLSPVPVDGNLRCKFELQELTPVSGGAQAVIKLTFEV
EDQPKASAICEWIIRYY---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI516 (SSI516Q) /CSM/SS/SSI5-A/SSI516Q.Seq.d/                       1178   0.0
SSD358 (SSD358Q) /CSM/SS/SSD3-C/SSD358Q.Seq.d/                       1172   0.0
VSG752 (VSG752Q) /CSM/VS/VSG7-C/VSG752Q.Seq.d/                       1057   0.0
VHQ207 (VHQ207Q) /CSM/VH/VHQ2-A/VHQ207Q.Seq.d/                       1035   0.0
VSE302 (VSE302Q) /CSM/VS/VSE3-A/VSE302Q.Seq.d/                        983   0.0
VSA377 (VSA377Q) /CSM/VS/VSA3-D/VSA377Q.Seq.d/                        922   0.0
SSL620 (SSL620Q) /CSM/SS/SSL6-A/SSL620Q.Seq.d/                        791   0.0
VSG483 (VSG483Q) /CSM/VS/VSG4-D/VSG483Q.Seq.d/                        789   0.0
VFI752 (VFI752Q) /CSM/VF/VFI7-C/VFI752Q.Seq.d/                         42   0.010
SLJ333 (SLJ333Q) /CSM/SL/SLJ3-B/SLJ333Q.Seq.d/                         42   0.010

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL512358|AL512358.2 Human chromosome 14 DNA sequence BAC R-1150C11 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    40  0.19  3
AL357117|AL357117.20 Human DNA sequence from clone RP11-436I24 on chromosome 6 Contains  STSs, GSSs and a CpG island.    46  0.27  2
AL358337|AL358337.1 Human chromosome 14 DNA sequence *** IN PROGRESS *** BAC R-236E5 of  library RPCI-11 from chromosome 14 of Homo sapiens (Human).    40  0.29  2
AC111731|AC111731.4 Rattus norvegicus clone CH230-161O22, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42  0.40  2
AC137440|AC137440.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42  0.41  2
AC022949|AC022949.2 Homo sapiens chromosome 6 clone RP11-99K14 map 6, WORKING DRAFT SEQUENCE, 13 unordered pieces.    36  0.73  4
AF003386|AF003386.1 Caenorhabditis elegans cosmid F59E12.    38  1.1  4
AC107733|AC107733.3 Mus musculus clone RP23-410E2, WORKING DRAFT SEQUENCE, 11 ordered pieces.    44  2.0  1
AC010187|AC010187.14 Homo sapiens chromosome 12 clone RP11-389O9, WORKING DRAFT SEQUENCE, 40 unordered pieces.    44  2.0  1
AC011795|AC011795.4 Homo sapiens clone RP11-17L2, WORKING DRAFT SEQUENCE, 17 unordered pieces.    44  2.0  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE010300_899(AE010300|pid:none) Leptospira interrogans serovar l...   149   7e-35
CP000248_3166(CP000248|pid:none) Novosphingobium aromaticivorans...   147   2e-34
CP000348_2304(CP000348|pid:none) Leptospira borgpetersenii serov...   147   2e-34
AE016823_2659(AE016823|pid:none) Leptospira interrogans serovar ...   146   4e-34
CP001068_2161(CP001068|pid:none) Ralstonia pickettii 12J chromos...   143   4e-33
CP000384_1738(CP000384|pid:none) Mycobacterium sp. MCS, complete...   142   5e-33
CU633749_1028(CU633749|pid:none) Cupriavidus taiwanensis str. LM...   141   2e-32
AM260479_1059(AM260479|pid:none) Ralstonia eutropha H16 chromoso...   140   2e-32
CP000431_2990(CP000431|pid:none) Rhodococcus jostii RHA1, comple...   140   2e-32
AL939110_1(AL939110|pid:none) Streptomyces coelicolor A3(2) comp...   140   3e-32

 psg: 0.78  gvh: 0.51  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SSI516 is cyt

>SSI516F.Seq
AACAAATTAGAAGAGTTGAAACATTAACTAATCATTTATGTTCATCATCAAATGAAAGTT
TTTATCTCTCATCAAATAATACAGATGCATCATTAAGAGAACTTGTTATTAGAGCACAAG
CTCAAAGAAATGCAAGAAATACTAAAACTCTTAAAGGTTTAGAAGAGATGAAAACTTTAG
TTGGTAAAGAGATTGGTACAAGTGAATACTTTAAAATCACTCAAGATCGTGTAAACTCTT
TTGCTGAATCAACTGGTGATTTCCAATGGATTCATATTGATCCAGAAAGAGCTAAATCTG
AAAGTCCTTTTGGTGGTCCAATTGCACATGGTTTCTTAACATTATCATTAGCACCAATGT
TTGCAGAAGAAGTTATGCCAAATGTTGAAGGTATTAAATATGGTGTAAATTATGGTTTCA
ATAAAATTAGATTCTTATCGCCAGTACCAGTCGATGGTAATTTAAGATGTAAATTTGAAT
TACAAGAATTAACACCAGTTTCAGGTGGTGCTCAAGCTGTTATTAAATTAACTTTTGAAG
TTGAAGATCAACCAAAAGCTTCTGCAATTTGTGAATGGATTATTCGTTACTATG------
----