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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI504
Library SS
(Link to library)
Clone ID SSI504
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U00527-1
Original site URL
Representative seq. ID SSI504Z
(Link to Original site)
Representative DNA sequence 
>SSI504 (SSI504Q) /CSM/SS/SSI5-A/SSI504Q.Seq.d/
XXXXXXXXXXCAATCATTGGAAAATGGTGAAATTTCATGGGATTCTGTTGTTAGTACTTG
TATTGATCTTCAAACTGCTGGTGCTGATACTTCTGCAAATACAATTTTATATTGTTTACT
TGAATTAATTAATAATCCAAATATTCAATCAAAAGTATATGACGATATTAAACAAGCAAT
AATTCAAAGTAAAGAAAATGAAAATCAGAATGATAATGAGAATCAAGAACAAACTGAAGA
AATTATAACATTATCATTTAATAAATATCGTACATTAGCACCATATTTATCAATGGTAGT
TAAGGAAACATTTAGAAAATATCCATCTGGTACAATTGGTTTACCTCATGTTACTTCAGA
AGATGTTGAATTAAATGGTTATAAAATCTGTGCTGGTACACAAATCATTCAAAACATTTG
GGCAACTCATAGAAATGAAAAACAATTCTCTGAACCAGATTCATTCATTCCTGAAAGATT
TATTTCTCAACAACAATCTGCAAACTCAAATTTAATTCACTTTGGATGTGGTGTTAGAGA
TTGTATTGGAAAATCACTAGCTGATTCAGAAATCTTTACAATGTTAGCAAGTTTAATTAA
TAGATATGAATTTACTAATCCAAATCCATCAACACCATTAAATGAAATTGGTAAATTTGG
TATTACATATTCTTGTCCAGAAAATAAAATAATAATTAAAAAAAGATTTTAATCTTTTAA
TAATAATAATAATAATAAAAATAATTACAGAATACTTTAACTTTTAAAA
sequence update 1998. 1. 8
Translated Amino Acid sequence 
---SLENGEISWDSVVSTCIDLQTAGADTSANTILYCLLELINNPNIQSKVYDDIKQAII
QSKENENQNDNENQEQTEEIITLSFNKYRTLAPYLSMVVKETFRKYPSGTIGLPHVTSED
VELNGYKICAGTQIIQNIWATHRNEKQFSEPDSFIPERFISQQQSANSNLIHFGCGVRDC
IGKSLADSEIFTMLASLINRYEFTNPNPSTPLNEIGKFGITYSCPENKIIIKKRF*sfnn
nnnnknnyril*llk
Translated Amino Acid sequence (All Frames) 
Frame A:
---nhwkmvkfhgilllvlvlifkllvlillqiqfyivyln*liiqifnqkymtilnkq*
fkvkkmkirmimriknklkkl*hyhlinivh*hhiyqw*lrkhlenihlvqlvylmllqk
mln*mviksvlvhksfktfgqliemknnslnqihsflkdlflnnnlqtqi*ftldvvlei
vlenh*liqkslqc*qv*lidmnlliqihqhh*mklvnlvlhilvqkik**lkkdfnlli
iiiiikiiteyfnf*


Frame B:
---iigkw*nfmgfcc*yly*ssncwc*yfckynfilft*in**skysiksi*ry*tsnn
sk*rk*kse***esrtn*rnyniii**isyistifings*gni*kisiwynwftscyfrr
c*ikwl*nlcwytnhskhlgns*k*ktil*trfihs*kiyfstticklkfnslwmwc*rl
ywkits*frnlynvskfn**i*iy*sksintik*nw*iwyyiflsrk*nnn*kkilif**
*****k*lqntltfk


Frame C:
---SLENGEISWDSVVSTCIDLQTAGADTSANTILYCLLELINNPNIQSKVYDDIKQAII
QSKENENQNDNENQEQTEEIITLSFNKYRTLAPYLSMVVKETFRKYPSGTIGLPHVTSED
VELNGYKICAGTQIIQNIWATHRNEKQFSEPDSFIPERFISQQQSANSNLIHFGCGVRDC
IGKSLADSEIFTMLASLINRYEFTNPNPSTPLNEIGKFGITYSCPENKIIIKKRF*sfnn
nnnnknnyril*llk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI504 (SSI504Q) /CSM/SS/SSI5-A/SSI504Q.Seq.d/                       1326   0.0
SLG684 (SLG684Q) /CSM/SL/SLG6-D/SLG684Q.Seq.d/                        959   0.0
SSJ415 (SSJ415Q) /CSM/SS/SSJ4-A/SSJ415Q.Seq.d/                        916   0.0
SSM394 (SSM394Q) /CSM/SS/SSM3-D/SSM394Q.Seq.d/                        831   0.0
AFK177 (AFK177Q) /CSM/AF/AFK1-D/AFK177Q.Seq.d/                        728   0.0
SSI868 (SSI868Q) /CSM/SS/SSI8-C/SSI868Q.Seq.d/                         60   5e-08
AFC386 (AFC386Q) /CSM/AF/AFC3-D/AFC386Q.Seq.d/                         52   1e-05
CFG492 (CFG492Q) /CSM/CF/CFG4-D/CFG492Q.Seq.d/                         50   5e-05
CFE155 (CFE155Q) /CSM/CF/CFE1-C/CFE155Q.Seq.d/                         50   5e-05
SSM757 (SSM757Q) /CSM/SS/SSM7-C/SSM757Q.Seq.d/                         46   8e-04
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    30  0.034  9
AC136206|AC136206.2 Sus scrofa clone RP44-458E19, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.12  3
CC736873|CC736873.1 PUIAA12TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0536A23, genomic survey sequence.    48  0.16  1
AW055694|AW055694.1 660014B12.x1 660 - Mixed stages of anther and pollen Zea mays cDNA, mRNA sequence.    48  0.16  1
AL805898|AL805898.10 Mouse DNA sequence from clone RP23-432F24 on chromosome 4.    44  0.18  2
BH388998|BH388998.1 AG-ND-132P14.TR ND-TAM Anopheles gambiae genomic clone AG-ND-132P14 , DNA sequence.    38  0.20  2
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    34  0.28  7
AC044794|AC044794.6 Homo sapiens chromosome 5 clone CTD-2143J7, WORKING DRAFT SEQUENCE, 25 unordered pieces.    36  0.30  6
AC115121|AC115121.2 Mus musculus chromosome UNK clone RP23-204O13, WORKING DRAFT SEQUENCE, 23 unordered pieces.    38  0.35  5
AC025949|AC025949.4 Staphylococcus aureus clone sabac-114, complete sequence.    36  0.58  5
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXG6) RecName: Full=Probable cytochrome P450 513A1;          ...   415   e-115
(Q1ZXI7) RecName: Full=Probable cytochrome P450 513F1;          ...   179   8e-44
(Q54WB9) RecName: Full=Probable cytochrome P450 513D1;          ...   151   2e-35
(Q4V8D1) RecName: Full=Cytochrome P450 2U1;          EC=1.14.14....   114   3e-24
AK290002_1(AK290002|pid:none) Homo sapiens cDNA FLJ75600 complet...   114   3e-24
EF423917_1(EF423917|pid:none) Oreochromis niloticus cytochrome P...   114   3e-24
AK304724_1(AK304724|pid:none) Homo sapiens cDNA FLJ51612 complet...   114   3e-24
(Q0IIF9) RecName: Full=Cytochrome P450 2U1;          EC=1.14.14....   113   7e-24
DQ324378_1(DQ324378|pid:none) Brassica napus flavonoid 3'-hydrox...   113   7e-24
(Q54LA8) RecName: Full=Probable cytochrome P450 555A1;          ...   113   7e-24
protein update 2009. 6.13
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSI504 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI504Z
3' end seq. 
>SSI504Z.Seq
----------CAATCATTGGAAAATGGTGAAATTTCATGGGATTCTGTTGTTAGTACTTG
TATTGATCTTCAAACTGCTGGTGCTGATACTTCTGCAAATACAATTTTATATTGTTTACT
TGAATTAATTAATAATCCAAATATTCAATCAAAAGTATATGACGATATTAAACAAGCAAT
AATTCAAAGTAAAGAAAATGAAAATCAGAATGATAATGAGAATCAAGAACAAACTGAAGA
AATTATAACATTATCATTTAATAAATATCGTACATTAGCACCATATTTATCAATGGTAGT
TAAGGAAACATTTAGAAAATATCCATCTGGTACAATTGGTTTACCTCATGTTACTTCAGA
AGATGTTGAATTAAATGGTTATAAAATCTGTGCTGGTACACAAATCATTCAAAACATTTG
GGCAACTCATAGAAATGAAAAACAATTCTCTGAACCAGATTCATTCATTCCTGAAAGATT
TATTTCTCAACAACAATCTGCAAACTCAAATTTAATTCACTTTGGATGTGGTGTTAGAGA
TTGTATTGGAAAATCACTAGCTGATTCAGAAATCTTTACAATGTTAGCAAGTTTAATTAA
TAGATATGAATTTACTAATCCAAATCCATCAACACCATTAAATGAAATTGGTAAATTTGG
TATTACATATTCTTGTCCAGAAAATAAAATAATAATTAAAAAAAGATTTTAATCTTTTAA
TAATAATAATAATAATAAAAATAATTACAGAATACTTTAACTTTTAAAA
Length of 3' end seq. 759
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -