>SSI485 (SSI485Q) /CSM/SS/SSI4-D/SSI485Q.Seq.d/
ATCTTAATCATTATAAAATCAAAACAAATAAAATAAATAAAAAAAATAAAATTTAATATA
AAAATGATTTCAAATAATAAATTTACAAGTAGTGATGACCTTTCATTAGTTAATAAAACT
AAATATTCAGATGAAGAATATTTAGTTCGTGTCAAATTGGCAGCAACTTATAGAATGGTC
GCACATTTAGGATGGGATGAATTGATTTATAATCATTTAACAGCAAGAGTACCAGGTACG
GATCATATGTTATTGAATGCATTTGGAATGAGATTTGATGAGGTTACAGCAACAAGTTTG
GTAACAATCGATATGGATGGAAAGATCATCGATGCCGGTAGTACCGATTTGGGTATCAAC
AAAACTGGGTATGTAATTCATGGTGCAATTCATAAAGCTCGTCCTGACATTCTCGCAACA
ATGCATGTACATCAAGAAXXXXXXXXXX

iliiikskqik*IKKIKFNIKMISNNKFTSSDDLSLVNKTKYSDEEYLVRVKLAATYRMV
AHLGWDELIYNHLTARVPGTDHMLLNAFGMRFDEVTATSLVTIDMDGKIIDAGSTDLGIN
KTGYVIHGAIHKARPDILATMHVHQ---

Frame A:
iliiikskqik*IKKIKFNIKMISNNKFTSSDDLSLVNKTKYSDEEYLVRVKLAATYRMV
AHLGWDELIYNHLTARVPGTDHMLLNAFGMRFDEVTATSLVTIDMDGKIIDAGSTDLGIN
KTGYVIHGAIHKARPDILATMHVHQ---


Frame B:
s*sl*nqnk*nk*kk*nli*k*fqiinlqvvmtfh*liklniqmkni*fvsnwqqliews
hi*dgmn*fiii*qqeyqvriicy*mhle*dlmrlqqqvw*qsiwmerssmpvvpiwvst
klgm*fmvqfiklvltfsqqcmyik---


Frame C:
lnhykiktnkinkknki*ykndfk**iyk***pfis**n*ifr*rifsscqigsnl*ngr
tfrmg*idl*sfnskstrygsyvieciwnei**gysnkfgnnrygwkdhrcr*yrfgyqq
nwvcnswcns*sss*hsrnnactsr---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI485 (SSI485Q) /CSM/SS/SSI4-D/SSI485Q.Seq.d/                        706   0.0
SSD356 (SSD356Q) /CSM/SS/SSD3-C/SSD356Q.Seq.d/                        438   e-122
SSK395 (SSK395Q) /CSM/SS/SSK3-D/SSK395Q.Seq.d/                        258   6e-68
AHH872 (AHH872Q) /CSM/AH/AHH8-C/AHH872Q.Seq.d/                         66   5e-10
SSG305 (SSG305Q) /CSM/SS/SSG3-A/SSG305Q.Seq.d/                         60   3e-08
VSG875 (VSG875Q) /CSM/VS/VSG8-D/VSG875Q.Seq.d/                         40   0.028
VHN634 (VHN634Q) /CSM/VH/VHN6-B/VHN634Q.Seq.d/                         40   0.028
VFO892 (VFO892Q) /CSM/VF/VFO8-D/VFO892Q.Seq.d/                         40   0.028
VFO806 (VFO806Q) /CSM/VF/VFO8-A/VFO806Q.Seq.d/                         40   0.028
VFO675 (VFO675Q) /CSM/VF/VFO6-D/VFO675Q.Seq.d/                         40   0.028

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX248324|BX248324.9 Zebrafish DNA sequence from clone DKEY-227H16 in linkage group 20.    42  0.52  4
AC104790|AC104790.4 Homo sapiens BAC clone RP11-167A8 from 4, complete sequence.    42  1.8  2
AC036195|AC036195.2 Homo sapiens chromosome 4 clone RP11-460L16 map 4, WORKING DRAFT SEQUENCE, 33 unordered pieces.    42  5.7  1
AC133876|AC133876.3 Mus musculus clone RP23-190E15, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42  5.7  1
BB274561|BB274561.1 Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830088K09, 3' end partial sequence.    42  5.7  1
AC068663|AC068663.4 Mus musculus chromosome 5 clone RP23-280D18 strain C57BL6/J, WORKING DRAFT SEQUENCE, 6 ordered pieces.    42  5.7  1
BU723425|BU723425.1 SJMAWC02 SJM Schistosoma japonicum cDNA, mRNA sequence.    42  5.7  1
AC026232|AC026232.3 Mus musculus chromosome 5 clone RP23-396K2 strain C57BL6/J, WORKING DRAFT SEQUENCE, 9 ordered pieces.    42  5.7  1
CC390034|CC390034.1 PUHPP25TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa505E02, DNA sequence.    42  5.7  1
AC104804|AC104804.4 Homo sapiens BAC clone RP11-460L16 from 4, complete sequence.    42  5.7  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016853_2440(AE016853|pid:none) Pseudomonas syringae pv. tomato...   118   7e-26
CP000058_2755(CP000058|pid:none) Pseudomonas syringae pv. phaseo...   118   7e-26
AM167904_2841(AM167904|pid:none) Bordetella avium 197N complete ...   117   1e-25
CP000388_3339(CP000388|pid:none) Pseudoalteromonas atlantica T6c...   117   2e-25
CP000090_890(CP000090|pid:none) Ralstonia eutropha JMP134 chromo...   116   3e-25
CP000378_2123(CP000378|pid:none) Burkholderia cenocepacia AU 105...   115   4e-25
CP000958_2755(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ...   115   4e-25
EF100191_35(EF100191|pid:none) Uncultured marine bacterium HF10_...   115   5e-25
AP009385_2657(AP009385|pid:none) Burkholderia multivorans ATCC 1...   114   1e-24
BC056003_1(BC056003|pid:none) Xenopus laevis hypothetical protei...   114   1e-24

 psg: 0.69  gvh: 0.28  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSI485 is cyt

>SSI485F.Seq
ATCTTAATCATTATAAAATCAAAACAAATAAAATAAATAAAAAAAATAAAATTTAATATA
AAAATGATTTCAAATAATAAATTTACAAGTAGTGATGACCTTTCATTAGTTAATAAAACT
AAATATTCAGATGAAGAATATTTAGTTCGTGTCAAATTGGCAGCAACTTATAGAATGGTC
GCACATTTAGGATGGGATGAATTGATTTATAATCATTTAACAGCAAGAGTACCAGGTACG
GATCATATGTTATTGAATGCATTTGGAATGAGATTTGATGAGGTTACAGCAACAAGTTTG
GTAACAATCGATATGGATGGAAAGATCATCGATGCCGGTAGTACCGATTTGGGTATCAAC
AAAACTGGGTATGTAATTCATGGTGCAATTCATAAAGCTCGTCCTGACATTCTCGCAACA
ATGCATGTACATCAAGAA----------