>SSI478 (SSI478Q) /CSM/SS/SSI4-D/SSI478Q.Seq.d/
ACTTTTTATCTCATTATTTTAATATTTTTTTCAAATTCGAATAGCAAAAATGTCTGCCAC
AGTCCACTATAAAGATATTAGAAAGGGAATGGAGAAAGACCTTGAAAGTTTGTTTAAAAA
ATATGATTCAGACCGTAATGGTAAAATTACCTATATTGAAATAGTAGAAACATTGAGAAA
AGCTGGTAAAAAAAATCCAGAGAGAATTGCTGATTTGCTTTTCCGTGATGATACTGATAA
AAATGGTGAATTAACAATTGAAGAGGCCAAACTTAGAATTGTTAGAATGAACGATGAGAA
AATTGAAAAAGTTTTAAATTGGGATGTTGAAAAATTTATTAATGATAATGATAAAGATGG
TGATAGAAAAATTACCAGAGATGAAGTTCTTCAAAGATTCACTGAACAAGGTGCTGAGGA
TCCAGAACTTATTACTGATAGTATCTTCAGACAAATGGATCTTGACCGTGATGGTGTAAT
CACCTGTGATGAAATCAAAGAATTCAACAGAAAGAAGAAATTCAGTTTCCTTAAATCATC
AGCACCAAAACAATAAAAAAGAAACATTACAAATTCACCCCTTTTTGAATTTTTTTTCTG
TTTTTAAATCAGATAATAATAAAATTAAATGTATTCATTTATTTTTTAAATAATTAAAAA
AAA

lfislf*YFFQIRIAKMSATVHYKDIRKGMEKDLESLFKKYDSDRNGKITYIEIVETLRK
AGKKNPERIADLLFRDDTDKNGELTIEEAKLRIVRMNDEKIEKVLNWDVEKFINDNDKDG
DRKITRDEVLQRFTEQGAEDPELITDSIFRQMDLDRDGVITCDEIKEFNRKKKFSFLKSS
APKQ*krnitnsplfefffcf*ir***n*mysfif*iikk

Frame A:
tfyliiliffsnsnsknvchspl*ry*kgngerp*kfv*ki*frp*w*nyly*nsrniek
sw*kksrenc*fafp**y**kw*inn*rgqt*nc*ner*en*ksfklgc*kiy*****rw
**knyqr*ssskih*trc*gsrtyy**ylqtngs*p*wcnhl**nqriqqkeeiqfp*ii
stktikkkhykftpf*ifflflnqiiiklnvfiyflnn*kk


Frame B:
lfislf*YFFQIRIAKMSATVHYKDIRKGMEKDLESLFKKYDSDRNGKITYIEIVETLRK
AGKKNPERIADLLFRDDTDKNGELTIEEAKLRIVRMNDEKIEKVLNWDVEKFINDNDKDG
DRKITRDEVLQRFTEQGAEDPELITDSIFRQMDLDRDGVITCDEIKEFNRKKKFSFLKSS
APKQ*krnitnsplfefffcf*ir***n*mysfif*iikk


Frame C:
flshyfniffkfe*qkclpqstikilerewrktlkvclknmiqtvmvklpilk**kh*ek
lvkkiqrellicfsvmilikmvn*qlkrpnlelle*tmrklkkf*igmlknllmimikmv
ieklpemkffkdslnkvlriqnlllivssdkwiltvmv*spvmksknsterrnsvslnhq
hqnnkketlqihpflnffsvfksdnnkikcihlffk*lkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF552 (VSF552Q) /CSM/VS/VSF5-C/VSF552Q.Seq.d/                       1063   0.0
VSE834 (VSE834Q) /CSM/VS/VSE8-B/VSE834Q.Seq.d/                       1063   0.0
VHN714 (VHN714Q) /CSM/VH/VHN7-A/VHN714Q.Seq.d/                       1063   0.0
SSI478 (SSI478Q) /CSM/SS/SSI4-D/SSI478Q.Seq.d/                       1063   0.0
CHE592 (CHE592Q) /CSM/CH/CHE5-D/CHE592Q.Seq.d/                       1063   0.0
AHO248 (AHO248Q) /CSM/AH/AHO2-B/AHO248Q.Seq.d/                       1063   0.0
AHJ220 (AHJ220Q) /CSM/AH/AHJ2-A/AHJ220Q.Seq.d/                       1063   0.0
SSM608 (SSM608Q) /CSM/SS/SSM6-A/SSM608Q.Seq.d/                       1057   0.0
VSC829 (VSC829Q) /CSM/VS/VSC8-B/VSC829Q.Seq.d/                       1037   0.0
AHO448 (AHO448Q) /CSM/AH/AHO4-B/AHO448Q.Seq.d/                       1035   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U55379|U55379.1 Dictyostelium discoideum calcium-binding protein CBP2 gene, complete cds.   418  0.0  6
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38  0.002  10
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    36  0.002  10
AL049181|AL049181.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P4.    38  0.003  7
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36  0.005  11
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.    34  0.006  4
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    38  0.010  7
BZ079335|BZ079335.1 llg32b08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44  0.010  2
AC105008|AC105008.5 Homo sapiens chromosome 8, clone CTD-2589E21, complete sequence.    50  0.035  1
AX392737|AX392737.1 Sequence 27 from Patent WO0212526.            38  0.073  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...   337   2e-91
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    90   7e-17
(Q39016) RecName: Full=Calcium-dependent protein kinase 11;     ...    67   5e-10
AY093022_1(AY093022|pid:none) Arabidopsis thaliana calcium-depen...    66   8e-10
FB924749_1(FB924749|pid:none) Sequence 144022 from Patent WO2008...    66   8e-10
EU181187_1(EU181187|pid:none) Triticum aestivum calcium-dependen...    65   1e-09
FB335001_1(FB335001|pid:none) Sequence 2527 from Patent WO200711...    65   1e-09
AM437552_1(AM437552|pid:none) Vitis vinifera contig VV78X030840....    65   1e-09
(P28582) RecName: Full=Calcium-dependent protein kinase;        ...    65   2e-09
AB051809_1(AB051809|pid:none) Solanum tuberosum RiCDPK2 mRNA for...    65   2e-09

 psg: 0.72  gvh: 0.14  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.02
 nuc: 0.16  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SSI478 is nuc

>SSI478E.Seq
ACTTTTTATCTCATTATTTTAATATTTTTTTCAAATTCGAATAGCAAAAATGTCTGCCAC
AGTCCACTATAAAGATATTAGAAAGGGAATGGAGAAAGACCTTGAAAGTTTGTTTAAAAA
ATATGATTCAGACCGTAATGGTAAAATTACCTATATTGAAATAGTAGAAACATTGAGAAA
AGCTGGTAAAAAAAATCCAGAGAGAATTGCTGATTTGCTTTTCCGTGATGATACTGATAA
AAATGGTGAATTAACAATTGAAGAGGCCAAACTTAGAATTGTTAGAATGAACGATGAGAA
AATTGAAAAAGTTTTAAATTGGGATGTTGAAAAATTTATTAATGATAATGATAAAGATGG
TGATAGAAAAATTACCAGAGATGAAGTTCTTCAAAGATTCACTGAACAAGGTGCTGAGGA
TCCAGAACTTATTACTGATAGTATCTTCAGACAAATGGATCTTGACCGTGATGGTGTAAT
CACCTGTGATGAAATCAAAGAATTCAACAGAAAGAAGAAATTCAGTTTCCTTAAATCATC
AGCACCAAAACAATAAAAAAGAAACATTACAAATTCACCCCTTTTTGAATTTTTTTTCTG
TTTTTAAATCAGATAATAATAAAATTAAATGTATTCATTTATTTTTTAAATAATTAAAAA
AAA