>SSI476 (SSI476Q) /CSM/SS/SSI4-D/SSI476Q.Seq.d/
AAATAAAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTATAGTT
TTAATAAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAAATAAAAAATAA
AAAAAAAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAA
AAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAACTT
TTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAXXXXXXXXXX

ikkkkkk*kki**vlkwysfnkkkkknhyh***kkk*kikkkkikknnnklyhgt*rk*k
slkkk*KIIKNKKKIKKKTFKTLLLLFGASVK---

Frame A:
k*kkkkknkkkfnkf*ngivlikkkkkttiisskkknkk*kkkk*kkiiisytmglrenk
kv*kknkk**kikkk*kkkllklsfyflvllls---


Frame B:
nkkkkkkikknlisfkmv*f**kkkkkplslvvkkkiknkkkknkkk***aipwdlekik
kfkkkiknnkk*kknkkknf*nspstfwcfc*a---


Frame C:
ikkkkkk*kki**vlkwysfnkkkkknhyh***kkk*kikkkkikknnnklyhgt*rk*k
slkkk*KIIKNKKKIKKKTFKTLLLLFGASVK---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC737 (VSC737Q) /CSM/VS/VSC7-B/VSC737Q.Seq.d/                         88   8e-17
VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                         88   8e-17
SSM803 (SSM803Q) /CSM/SS/SSM8-A/SSM803Q.Seq.d/                         88   8e-17
SSM762 (SSM762Q) /CSM/SS/SSM7-C/SSM762Q.Seq.d/                         88   8e-17
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                         88   8e-17
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                         88   8e-17
SSM602 (SSM602Q) /CSM/SS/SSM6-A/SSM602Q.Seq.d/                         88   8e-17
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                         88   8e-17
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                         88   8e-17
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                         88   8e-17

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                    88  3e-37  3
AC109150|AC109150.4 Mus musculus clone RP24-536C12, WORKING DRAFT SEQUENCE, 6 ordered pieces.    44  0.91  1
AC100496|AC100496.1 Mus musculus clone RP23-143E17, LOW-PASS SEQUENCE SAMPLING.    44  0.91  1
AX508705|AX508705.1 Sequence 3400 from Patent WO0216655.          42  3.6  1
AL356014|AL356014.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F25L23.    42  3.6  1
AC098812|AC098812.3 Papio cynocephalus anubis clone RP41-440G22, complete sequence.    42  3.6  1
AL844180|AL844180.6 Mouse DNA sequence from clone RP23-403A4 on chromosome 4.    44  4.4  2
AC017643|AC017643.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    40     14  1
AP004153|AP004153.1 Oryza sativa genomic DNA, chromosome 2, BAC clone:OJ1111_C07, WORKING DRAFT SEQUENCE, 1 ordered pieces.    40     14  1
AL133238|AL133238.3 Human chromosome 14 DNA sequence BAC C-2510G9 of library CalTech-D  from chromosome 14 of Homo sapiens (Human).    40     14  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 104,990,758

 psg: 0.72  gvh: 0.36  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSI476 is nuc

>SSI476F.Seq
AAATAAAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTATAGTT
TTAATAAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAAATAAAAAATAA
AAAAAAAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAA
AAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAACTT
TTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTA----------