>SSI475 (SSI475Q) /CSM/SS/SSI4-D/SSI475Q.Seq.d/
XXXXXXXXXXATTCGTACAATTAATTTAGATGGTAAGATCATTAAATTACAAATCTGGGA
TACTGCAGGACAAGAAAGATTCAGAACAATTACATCATCATATTATCGTGGTGCACATGG
TATCATCGTTGTGTATGATGTCACTGATCATGTCAGTTTCAACAATGTCAAACAATGGAT
GCAAGAAATTCAAAGATATGCATGTGATAGTGTAACTCGTTTACTCGTTGGTAACAAATG
TGATCTCATTGAAAAGAAGATCGTCGATACCAGTACCGCCAGAGAATATGCCGACTCTGT
TGGTATTCCATTTTTGGAAACATCTGCCAAATCATCAGCAAATGTAGAACAAGCATTTAT
GATTATGGCTAGTGAAATTAAAAAGTTACAAGGTGGTATTCAACCAAATAACAACTCCAC
TTACAATGCTCATGTTGTTAAACCAACTGGTTTCACTCCAATTGGTAAAAAGAAGAAATG
TTCAATCATATAAATGTATCGTTGGTTACTCCTCCCCTTTTTTTCAATAATCAAA

---RTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQ
EIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMI
MASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKCSII*myrwlllpffsiik

Frame A:
---fvqli*mvrslnyksgilqdkkdseqlhhhiivvhmvsslcmmslimsvstmsnngc
kkfkdmhviv*lvyslvtnvislkrrssipvppenmptllvfhfwkhlpnhqqm*nkhl*
lwlvklksykvvfnqittpltmlmllnqlvslqlvkrrnvqsykcivgysspffq*s


Frame B:
---syn*frw*dh*itnlgycrtrkiqnnyiiilswctwyhrcv*ch*scqfqqcqtmda
rnskicm**cnsftrw*qm*sh*kedrryqyrqricrlcwysifgnicqiiskcrtsiyd
yg**n*kvtrwystk*qlhlqcscc*tnwfhsnw*keemfnhinvslvtpplffnnq


Frame C:
---RTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQ
EIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMI
MASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKCSII*myrwlllpffsiik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM886 (SSM886Q) /CSM/SS/SSM8-D/SSM886Q.Seq.d/                       1005   0.0
SSM603 (SSM603Q) /CSM/SS/SSM6-A/SSM603Q.Seq.d/                       1005   0.0
SSL855 (SSL855Q) /CSM/SS/SSL8-C/SSL855Q.Seq.d/                       1005   0.0
SSL682 (SSL682Q) /CSM/SS/SSL6-D/SSL682Q.Seq.d/                       1005   0.0
SSI475 (SSI475Q) /CSM/SS/SSI4-D/SSI475Q.Seq.d/                       1005   0.0
SSE547 (SSE547Q) /CSM/SS/SSE5-B/SSE547Q.Seq.d/                       1005   0.0
SSL623 (SSL623Q) /CSM/SS/SSL6-A/SSL623Q.Seq.d/                        981   0.0
VHG241 (VHG241Q) /CSM/VH/VHG2-B/VHG241Q.Seq.d/                        823   0.0
SLC331 (SLC331Q) /CSM/SL/SLC3-B/SLC331Q.Seq.d/                        741   0.0
SSB561 (SSB561Q) /CSM/SS/SSB5-C/SSB561Q.Seq.d/                        733   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L21010|L21010.1 Dictyostelium discoideum Rab1B mRNA, 3' end of cds.   813  0.0  3
L21009|L21009.1 Dictyostelium discoideum Rab1A mRNA, complete cds.   172  3e-45  2
AL440480|AL440480.1 T3 end of clone BD0AA012F12 of library BD0AA from strain CBS 94 of  Candida tropicalis.   107  2e-28  3
AL437528|AL437528.1 T7 end of clone BC0AA009H04 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.   101  4e-19  2
BQ655324|BQ655324.1 NXRV092_H08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV092_H08 5' similar to Arabidopsis thaliana sequence At4g17530 ras-related small GTP-binding protein RAB1c see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence.    68  8e-18  3
BF824696|BF824696.1 SWOv3MCAM52F09SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWOv3MCAM52F09 5', mRNA sequence.    56  9e-18  4
BI512607|BI512607.1 BB160009B20B06 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160009B20B06 5', mRNA sequence.    54  1e-17  4
BG661470|BG661470.1 kx02c10.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RAB1_LYMST Q05974 RAS-RELATED PROTEIN RAB-1A. ;, mRNA sequence.    88  1e-17  2
AB015237|AB015237.1 Dictyostelium discoideum Rab1C mRNA, complete cds.    86  7e-17  2
AU299537|AU299537.1 Cryptomeria japonica mRNA, clone: CM1061, 5' end, expressed in male cone.    68  1e-15  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34140) RecName: Full=Ras-related protein Rab-1B;                    322   3e-87
L21010_1(L21010|pid:none) Dictyostelium discoideum Rab1B mRNA, 3...   313   1e-84
BT059700_1(BT059700|pid:none) Salmo salar clone ssal-rgf-002-342...   212   5e-54
EF103367_1(EF103367|pid:none) Haliotis discus discus Ras-related...   211   1e-53
(P22125) RecName: Full=Ras-related protein ORAB-1;  &M38393_1(M3...   210   2e-53
AF101310_4(AF101310|pid:none) Caenorhabditis elegans cosmid C39F...   210   2e-53
AY321327_1(AY321327|pid:none) Rattus norvegicus Ac2-048 mRNA, co...   209   3e-53
BC045014_1(BC045014|pid:none) Xenopus laevis RAB1, member RAS on...   209   3e-53
AL606522_3(AL606522|pid:none) Mouse DNA sequence from clone RP23...   208   6e-53
DQ214474_1(DQ214474|pid:none) Taeniopygia guttata clone 0063P003...   208   6e-53

 psg: 0.74  gvh: 0.43  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.10  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal

>> prediction for SSI475 is nuc

>SSI475Z.Seq
----------ATTCGTACAATTAATTTAGATGGTAAGATCATTAAATTACAAATCTGGGA
TACTGCAGGACAAGAAAGATTCAGAACAATTACATCATCATATTATCGTGGTGCACATGG
TATCATCGTTGTGTATGATGTCACTGATCATGTCAGTTTCAACAATGTCAAACAATGGAT
GCAAGAAATTCAAAGATATGCATGTGATAGTGTAACTCGTTTACTCGTTGGTAACAAATG
TGATCTCATTGAAAAGAAGATCGTCGATACCAGTACCGCCAGAGAATATGCCGACTCTGT
TGGTATTCCATTTTTGGAAACATCTGCCAAATCATCAGCAAATGTAGAACAAGCATTTAT
GATTATGGCTAGTGAAATTAAAAAGTTACAAGGTGGTATTCAACCAAATAACAACTCCAC
TTACAATGCTCATGTTGTTAAACCAACTGGTTTCACTCCAATTGGTAAAAAGAAGAAATG
TTCAATCATATAAATGTATCGTTGGTTACTCCTCCCCTTTTTTTCAATAATCAAA