>SSI473 (SSI473Q) /CSM/SS/SSI4-D/SSI473Q.Seq.d/
XXXXXXXXXXGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCC
AGTTCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACC
AAATGATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAAC
TTCTGCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACC
AAAACAAACTACAAAAGGTTTTAATATTGGTGGTCAACCAGGTAATCCAACAAATTAATT
AAATAATAATAATAAAAAAAGAAAAAAATAAAAAAAAAAATAAAAAAAAAATATTTCAAA
CAAAAGTAATAAAATTAAATCAATAATTAAAAAAATAAATAAATAAAAGTATATTTTAAA
AATAAA

---YAQQIWGIEEWKRPGPVPVSNEEARSLLVPPPSGSPNDINAISIERLSPLTFVKQTS
ASPLSVISGGDKTNNTLKPKQTTKGFNIGGQPGNPTN*lnnnnkkrkk*kkk*kknisnk
snkiksiikkink*kyilki

Frame A:
---smlnkfgvlkngrdqvqfqfqmkklvly*fhhhlvhqmismlsqlkdyhl*lllnkl
lllhyllslvvikpttl*nqnklqkvlilvvnqviqqin*iiiikkeknkkknkkkifqt
kviklnq*lkk*inksif*k*


Frame B:
---vcstnlgy*rmeetrssssfk*rssffissttiwftk*yqcyln*kiitfnfc*tnf
cfsiicylww**nqqhfktktnykrf*ywwstr*snklik****kkkkikkkikkkyfkq
k**n*inn*knk*ikvyfknk


Frame C:
---YAQQIWGIEEWKRPGPVPVSNEEARSLLVPPPSGSPNDINAISIERLSPLTFVKQTS
ASPLSVISGGDKTNNTLKPKQTTKGFNIGGQPGNPTN*lnnnnkkrkk*kkk*kknisnk
snkiksiikkink*kyilki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI473 (SSI473Q) /CSM/SS/SSI4-D/SSI473Q.Seq.d/                        601   e-171
SSE676 (SSE676Q) /CSM/SS/SSE6-D/SSE676Q.Seq.d/                        601   e-171
SSC836 (SSC836Q) /CSM/SS/SSC8-B/SSC836Q.Seq.d/                        601   e-171
SLE102 (SLE102Q) /CSM/SL/SLE1-A/SLE102Q.Seq.d/                        601   e-171
SHK234 (SHK234Q) /CSM/SH/SHK2-B/SHK234Q.Seq.d/                        601   e-171
SHG849 (SHG849Q) /CSM/SH/SHG8-C/SHG849Q.Seq.d/                        601   e-171
CHJ670 (CHJ670Q) /CSM/CH/CHJ6-C/CHJ670Q.Seq.d/                        601   e-171
AHM406 (AHM406Q) /CSM/AH/AHM4-A/AHM406Q.Seq.d/                        601   e-171
AHB359 (AHB359Q) /CSM/AH/AHB3-C/AHB359Q.Seq.d/                        601   e-171
SSL263 (SSL263Q) /CSM/SS/SSL2-C/SSL263Q.Seq.d/                        599   e-170

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.   601  e-168  1
BE470067|BE470067.1 IpHdk03092 Head kidney cDNA library Ictalurus punctatus cDNA 5' similar to Dual specificity phosphatase 10 (DUSP10), mRNA sequence.    50  0.022  1
AJ226749|AJ226749.1 Ciona intestinalis genomic fragment, clone 19H7.    50  0.022  1
AX251513|AX251513.1 Sequence 481 from Patent WO0168912.           48  0.087  1
AC106668|AC106668.4 Rattus norvegicus clone CH230-101D9, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    46  0.34  1
BE021617|BE021617.1 sm60c03.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-8285 5' similar to TR:O81784 O81784 HYPOTHETICAL 36.0 KD PROTEIN. ;, mRNA sequence.    46  0.34  1
AC111639|AC111639.4 Rattus norvegicus clone CH230-100I8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46  0.34  1
AW620673|AW620673.1 sj08c01.y1 Gm-c1032 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1032-1273 5' similar to TR:O81784 O81784 HYPOTHETICAL 36.0 KD PROTEIN. ;, mRNA sequence.    46  0.34  1
BI971157|BI971157.1 GM830012B10F11 Gm-r1083 Glycine max cDNA clone Gm-r1083-4509 3', mRNA sequence.    46  0.34  1
AC093434|AC093434.1 Homo sapiens chromosome 1 clone RP11-100D1, WORKING DRAFT SEQUENCE, 4 unordered pieces.    46  0.34  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66912_1(U66912|pid:none) Dictyostelium discoideum ORF DG1016 ge...    35   1.1
AY220914_1(AY220914|pid:none) Dictyostelium discoideum ComB (com...    35   1.1
EF155942_1(EF155942|pid:none) Populus trichocarpa RAP2-like prot...    35   1.1
FJ406463_1(FJ406463|pid:none) Aspergillus fumigatus strain CBS 1...    32   5.2
FJ406464_1(FJ406464|pid:none) Aspergillus fumigatus strain IHEM ...    32   5.2
AF025541_1(AF025541|pid:none) Aspergillus fumigatus polyketide s...    32   5.2
FJ406465_1(FJ406465|pid:none) Aspergillus fumigatus strain IHEM ...    32   5.2
FJ406468_1(FJ406468|pid:none) Aspergillus fumigatus strain IHEM ...    32   5.2
FJ406467_1(FJ406467|pid:none) Aspergillus fumigatus strain IHEM ...    32   5.2
D21203_1(D21203|pid:none) Drosophila melanogaster forked mRNA fo...    32   5.3

 psg: 0.75  gvh: 0.60  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for SSI473 is cyt

>SSI473Z.Seq
----------GAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCC
AGTTCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACC
AAATGATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAAC
TTCTGCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACC
AAAACAAACTACAAAAGGTTTTAATATTGGTGGTCAACCAGGTAATCCAACAAATTAATT
AAATAATAATAATAAAAAAAGAAAAAAATAAAAAAAAAAATAAAAAAAAAATATTTCAAA
CAAAAGTAATAAAATTAAATCAATAATTAAAAAAATAAATAAATAAAAGTATATTTTAAA
AATAAA