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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI468
Library SS
(Link to library)
Clone ID SSI468
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID SSI468Z
(Link to Original site)
Representative DNA sequence 
>SSI468 (SSI468Q) /CSM/SS/SSI4-C/SSI468Q.Seq.d/
XXXXXXXXXXATTAACTTGAGCCAGCGGACAAGGTAGTGGATCCAGTAGTGCAGGATCAA
ATGAACGAGCTAAACAACATTTCACTTGTGTTACTGGTCCAGTCCTTTGTGCTTATTTGA
TTATCTCAATCTTATTAGCCATTTTATTCACTGGTATTTGTTGTATTTCTGATCTCCAAG
TTCCAGATAGATACGAAGCACCAAAGAGCAAAGTACTTTAAAAAAAAAAAAATAATAAAA
AATTAATACCAAATAATTTATAAAACAAATAAAATATGACATATAATAAAAAATAAAAAA
TAAACAAAAA
sequence update 1998. 1. 8
Translated Amino Acid sequence 
---lt*ASGQGSGSSSAGSNERAKQHFTCVTGPVLCAYLIISILLAILFTGICCISDLQV
PDRYEAPKSKVL*kkknnkklipnnl*nk*nmtynkk*kink
Translated Amino Acid sequence (All Frames) 
Frame A:
---lt*ASGQGSGSSSAGSNERAKQHFTCVTGPVLCAYLIISILLAILFTGICCISDLQV
PDRYEAPKSKVL*kkknnkklipnnl*nk*nmtynkk*kink


Frame B:
---*lepadkvvdpvvqdqmnelnnislvllvqsfvli*lsqsy*pfyslvfvvfliskf
qidtkhqrakyfkkkkiikn*yqiiyktnki*hiiknkk*tk


Frame C:
---nlsqrtr*wiq*crik*ts*ttfhlcywssplclfdylnlishfihwyllyf*spss
r*irstkeqstlkkkk**kintk*fikqikydi**kiknkqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI468 (SSI468Q) /CSM/SS/SSI4-C/SSI468Q.Seq.d/                        414   e-115
SSM176 (SSM176Q) /CSM/SS/SSM1-D/SSM176Q.Seq.d/                        335   2e-91
SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/                        335   2e-91
SSL653 (SSL653Q) /CSM/SS/SSL6-C/SSL653Q.Seq.d/                        335   2e-91
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/                        335   2e-91
SSK616 (SSK616Q) /CSM/SS/SSK6-A/SSK616Q.Seq.d/                        335   2e-91
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/                        335   2e-91
SSK304 (SSK304Q) /CSM/SS/SSK3-A/SSK304Q.Seq.d/                        335   2e-91
SSK290 (SSK290Q) /CSM/SS/SSK2-D/SSK290Q.Seq.d/                        335   2e-91
SSJ466 (SSJ466Q) /CSM/SS/SSJ4-C/SSJ466Q.Seq.d/                        335   2e-91
own update 2002. 8.14
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   327  4e-86  1
BZ237908|BZ237908.1 CH230-418F3.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-418F3, DNA sequence.    46  0.25  1
BX005105|BX005105.5 Zebrafish DNA sequence from clone DKEY-37M8.    38  1.5  3
BX166913|BX166913.1 Danio rerio genomic clone DKEY-168C3, genomic survey sequence.    42  3.8  1
AP004505|AP004505.1 Lotus japonicus genomic DNA, chromosome 3, clone:LjT10E18, TM0035.    42  3.8  1
BX088589|BX088589.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-27E7.    42  3.8  1
AC006052|AC006052.5 Homo sapiens chromosome 4 clone C0281M17 map 4p16.3, complete sequence.    34  4.7  3
AC128812|AC128812.3 Rattus norvegicus clone CH230-74E1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  6.0  2
BM029242|BM029242.1 IpSkn00196 Skin cDNA library Ictalurus punctatus cDNA 5', mRNA sequence.    36  6.4  2
AL929467|AL929467.6 Zebrafish DNA sequence from clone CH211-148E17.    42     14  3
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...    71   1e-11
protein update 2009. 2. 1
PSORT 

 psg: 0.83  gvh: 0.75  alm: 0.14  top: 0.43  tms: 0.07  mit: 0.21  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.15  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	 12.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSI468 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI468Z
3' end seq. 
>SSI468Z.Seq
----------ATTAACTTGAGCCAGCGGACAAGGTAGTGGATCCAGTAGTGCAGGATCAA
ATGAACGAGCTAAACAACATTTCACTTGTGTTACTGGTCCAGTCCTTTGTGCTTATTTGA
TTATCTCAATCTTATTAGCCATTTTATTCACTGGTATTTGTTGTATTTCTGATCTCCAAG
TTCCAGATAGATACGAAGCACCAAAGAGCAAAGTACTTTAAAAAAAAAAAAATAATAAAA
AATTAATACCAAATAATTTATAAAACAAATAAAATATGACATATAATAAAAAATAAAAAA
TAAACAAAAA
Length of 3' end seq. 300
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -