SSI467
Library SS
(Link to library)
Clone ID SSI467
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13974-1
Original site URL
Representative seq. ID SSI467Z
(Link to Original site)
Representative DNA sequence
>SSI467 (SSI467Q) /CSM/SS/SSI4-C/SSI467Q.Seq.d/
XXXXXXXXXXTAAATGTAAAGTATCATGGTGTACACCAGAAGGTATTTGTCAACCAAAAT
TCAAATCTGAAATTGATGATAATAACTCTTGTACATTAGATTCATGCGATCCATGTACTG
GTATTATCTCTCATATGACCGCACCACAATGTTTAAGTTGTAATCAATGTTCAAATTAAT
TTTTAAAAAATAAAATAAAAATGAGAAATAATTAAAATAATTAAAACAAATAAACATTAA
AATGATATTTAGGTTTTAAATTTAAATTCTAA
sequence update 1998. 1. 8
Translated Amino Acid sequence
---KCKVSWCTPEGICQPKFKSEIDDNNSCTLDSCDPCTGIISHMTAPQCLSCNQCSN*f
lknkikmrnn*nn*nk*tlk*ylgfkfkf*


Translated Amino Acid sequence (All Frames)
Frame A:
---KCKVSWCTPEGICQPKFKSEIDDNNSCTLDSCDPCTGIISHMTAPQCLSCNQCSN*f
lknkikmrnn*nn*nk*tlk*ylgfkfkf*


Frame B:
---nvkyhgvhqkvfvnqnsnlklmiitlvh*ihaihvlvlsli*phhnv*vvinvqinf
*kik*k*eiikiiktnkh*ndi*vlnlns


Frame C:
---m*simvytrrylstkiqi*n****llyirfmrsmywyylsydrttmfkl*smfklif
kk*nknek*lk*lkqinikmifrf*i*il


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM856 (SSM856Q) /CSM/SS/SSM8-C/SSM856Q.Seq.d/ 321 3e-87
SSI883 (SSI883Q) /CSM/SS/SSI8-D/SSI883Q.Seq.d/ 321 3e-87
SSI787 (SSI787Q) /CSM/SS/SSI7-D/SSI787Q.Seq.d/ 321 3e-87
SSI467 (SSI467Q) /CSM/SS/SSI4-C/SSI467Q.Seq.d/ 321 3e-87
SSH757 (SSH757Q) /CSM/SS/SSH7-C/SSH757Q.Seq.d/ 321 3e-87
SSH685 (SSH685Q) /CSM/SS/SSH6-D/SSH685Q.Seq.d/ 321 3e-87
SSG476 (SSG476Q) /CSM/SS/SSG4-D/SSG476Q.Seq.d/ 321 3e-87
SSF155 (SSF155Q) /CSM/SS/SSF1-C/SSF155Q.Seq.d/ 321 3e-87
SSE357 (SSE357Q) /CSM/SS/SSE3-C/SSE357Q.Seq.d/ 321 3e-87
SSE159 (SSE159Q) /CSM/SS/SSE1-C/SSE159Q.Seq.d/ 321 3e-87

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC108595|AC108595.4 Rattus norvegicus clone CH230-216D22, WORKING DRAFT SEQUENCE, 2 unordered pieces. 50 0.014 1
AC118449|AC118449.4 Rattus norvegicus clone CH230-344I6, WORKING DRAFT SEQUENCE, 1 ordered piece. 34 0.53 5
AC117049|AC117049.4 Rattus norvegicus clone CH230-14J22, WORKING DRAFT SEQUENCE, 1 ordered piece. 34 0.58 3
BZ811458|BZ811458.1 PUGAX77TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa326N10, DNA sequence. 44 0.84 1
AL356913|AL356913.15 Human DNA sequence from clone RP4-759M20 on chromosome 1p31.2-32.1. 44 0.84 1
BX544876|BX544876.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-167B20. 44 0.84 1
AC016508|AC016508.5 Homo sapiens clone RP11-10D5, WORKING DRAFT SEQUENCE, 19 unordered pieces. 44 0.84 1
BB768159|BB768159.1 Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370082D22, 3' end partial sequence. 44 0.84 1
BZ811467|BZ811467.1 PUGAX77TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa326N10, DNA sequence. 44 0.84 1
AG181024|AG181024.1 Pan troglodytes DNA, clone: RP43-053M11.TJ. 44 0.84 1
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 129 3e-29
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 55 6e-07
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 46 3e-04
(Q55FQ2) RecName: Full=Putative uncharacterized protein DDB_G026... 43 0.004
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 40 0.019
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 40 0.032
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 39 0.055
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 38 0.12
DQ665917_21(DQ665917|pid:none) Ranid herpesvirus 1 strain McKinn... 37 0.16
CP000113_6294(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 36 0.35
protein update 2009. 2. 1
PSORT

psg: 0.63 gvh: 0.55 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar

>> prediction for SSI467 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI467Z
3' end seq.
>SSI467Z.Seq
----------TAAATGTAAAGTATCATGGTGTACACCAGAAGGTATTTGTCAACCAAAAT
TCAAATCTGAAATTGATGATAATAACTCTTGTACATTAGATTCATGCGATCCATGTACTG
GTATTATCTCTCATATGACCGCACCACAATGTTTAAGTTGTAATCAATGTTCAAATTAAT
TTTTAAAAAATAAAATAAAAATGAGAAATAATTAAAATAATTAAAACAAATAAACATTAA
AATGATATTTAGGTTTTAAATTTAAATTCTAA
Length of 3' end seq. 262
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -