>SSI466 (SSI466Q) /CSM/SS/SSI4-C/SSI466Q.Seq.d/
GAACATATAAAAAAAAAATGACAGAAATTAATTCAGGTACTCCAGTTTCTCATATGGCCC
ATCATATTCCAAAATTTGCAAAATATACAAAAGACATTGGTTTGGCTGATCCAAAGAAAG
AAATTCAATATTCAATCGTTTTAAAAATTAGAAACCAAGAATGGATTGAAAAACAACTAA
AAGATGTTTCAGATCCAAGTAGTGAAAACTATGGTAAACATTTAGGAAAGGATGAAATAG
AATCAATGACAAAACCATCACAAGCTCATTTTGATAAAGTTTCCAACTTTTTACAATCCA
AAGGTATTCAATCAACTAGAGATGGTGATAATTTAAAGGTATTATCATCAATTGAAAAAA
CTCAAGACTTATTTAAAACTCAAATCCATAAAXXXXXXXXXX

TYKKKMTEINSGTPVSHMAHHIPKFAKYTKDIGLADPKKEIQYSIVLKIRNQEWIEKQLK
DVSDPSSENYGKHLGKDEIESMTKPSQAHFDKVSNFLQSKGIQSTRDGDNLKVLSSIEKT
QDLFKTQIH---

Frame A:
ehikkk*qkliqvlqfliwpiifqnlqniqktlvwliqrkkfniqsf*kletknglknn*
kmfqiqvvktmvni*ermk*nq*qnhhklilikfptfynpkvfnqlemvii*ryyhqlkk
lktylklksi---


Frame B:
ni*kkndrn*fryssfsygpsyskickiykrhwfg*skernsifnrfkn*kprmd*kttk
rcfrsk**klw*tfrkg*nrindktitssf**sfqlftiqrysin*rw**fkgiiin*kn
srli*nsnp*---


Frame C:
TYKKKMTEINSGTPVSHMAHHIPKFAKYTKDIGLADPKKEIQYSIVLKIRNQEWIEKQLK
DVSDPSSENYGKHLGKDEIESMTKPSQAHFDKVSNFLQSKGIQSTRDGDNLKVLSSIEKT
QDLFKTQIH---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI466 (SSI466Q) /CSM/SS/SSI4-C/SSI466Q.Seq.d/                        741   0.0
SSH841 (SSH841Q) /CSM/SS/SSH8-B/SSH841Q.Seq.d/                        733   0.0
SSD148 (SSD148Q) /CSM/SS/SSD1-B/SSD148Q.Seq.d/                        733   0.0
SSG326 (SSG326Q) /CSM/SS/SSG3-B/SSG326Q.Seq.d/                        674   0.0
SSG583 (SSG583Q) /CSM/SS/SSG5-D/SSG583Q.Seq.d/                        426   e-118
VFC423 (VFC423Q) /CSM/VF/VFC4-A/VFC423Q.Seq.d/                        270   1e-71
VHO166 (VHO166Q) /CSM/VH/VHO1-C/VHO166Q.Seq.d/                         36   0.39
SHL637 (SHL637Q) /CSM/SH/SHL6-B/SHL637Q.Seq.d/                         36   0.39
SHG112 (SHG112Q) /CSM/SH/SHG1-A/SHG112Q.Seq.d/                         36   0.39
SHD477 (SHD477Q) /CSM/SH/SHD4-D/SHD477Q.Seq.d/                         36   0.39

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC128812|AC128812.3 Rattus norvegicus clone CH230-74E1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.32  1
Z70204|Z70204.1 Caenorhabditis elegans cosmid C11G6.              38  0.55  2
BF415419|BF415419.1 UI-R-CA1-bjz-a-08-0-UI.s1 UI-R-CA1 Rattus norvegicus cDNA clone UI-R-CA1-bjz-a-08-0-UI 3', mRNA sequence.    28  0.70  4
AC123722|AC123722.3 Mus musculus clone RP23-424O22, WORKING DRAFT SEQUENCE, 12 unordered pieces.    36  0.71  5
AC132527|AC132527.3 Rattus norvegicus clone CH230-182P17, *** SEQUENCING IN PROGRESS ***, 66 unordered pieces.    34  0.85  7
AL445585|AL445585.8 Human DNA sequence from clone RP11-54A3 on chromosome 13.    38  0.86  6
AP000606|AP000606.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTO24.    42  0.92  3
AC126810|AC126810.5 Rattus norvegicus clone CH230-6G11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  1.3  1
BE004147|BE004147.1 CM0-BN0103-160300-291-h02 BN0103 Homo sapiens cDNA, mRNA sequence.    44  1.3  1
CD815413|CD815413.1 BN15.026D23F020214 BN15 Brassica napus cDNA clone BN15026D23, mRNA sequence.    44  1.3  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC163102_1(BC163102|pid:none) Danio rerio tripeptidyl peptidase ...    56   3e-07
AY826921_1(AY826921|pid:none) Heterocapsa triquetra clone HTP1 p...    53   3e-06
AC116960_13(AC116960|pid:none) Dictyostelium discoideum chromoso...    52   6e-06
DQ242648_1(DQ242648|pid:none) Phanerochaete chrysosporium family...    52   8e-06
AJ011912_1(AJ011912|pid:none) Mus musculus mRNA for putative tri...    51   1e-05
CQ834688_1(CQ834688|pid:none) Sequence 559 from Patent WO2004058...    51   1e-05
AY358502_1(AY358502|pid:none) Homo sapiens clone DNA39520 CLN2 (...    51   1e-05
AF017456_1(AF017456|pid:none) Homo sapiens lysosomal pepstatin i...    51   1e-05
(O89023) RecName: Full=Tripeptidyl-peptidase 1;          Short=T...    51   1e-05
AK312388_1(AK312388|pid:none) Homo sapiens cDNA, FLJ92718, highl...    51   1e-05

 psg: 0.83  gvh: 0.23  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SSI466 is nuc

>SSI466F.Seq
GAACATATAAAAAAAAAATGACAGAAATTAATTCAGGTACTCCAGTTTCTCATATGGCCC
ATCATATTCCAAAATTTGCAAAATATACAAAAGACATTGGTTTGGCTGATCCAAAGAAAG
AAATTCAATATTCAATCGTTTTAAAAATTAGAAACCAAGAATGGATTGAAAAACAACTAA
AAGATGTTTCAGATCCAAGTAGTGAAAACTATGGTAAACATTTAGGAAAGGATGAAATAG
AATCAATGACAAAACCATCACAAGCTCATTTTGATAAAGTTTCCAACTTTTTACAATCCA
AAGGTATTCAATCAACTAGAGATGGTGATAATTTAAAGGTATTATCATCAATTGAAAAAA
CTCAAGACTTATTTAAAACTCAAATCCATAAA----------