>SSI464 (SSI464Q) /CSM/SS/SSI4-C/SSI464Q.Seq.d/
AATTTAATATCATTTTATTGTTATTTTGATTTTTTAAAGAAACAACAAAAAAAAAAAAAA
AAAAAAAAAAAAAATGAAAATATTAATATTATTATTTTTATGTATTTTAAGTTTATGTTA
TGCATCAAATTTAGATAGCATAAAAGCAAATCCAACAGAATGTGAAGCATGTCAAATTGT
TATTGGTTATGTTGAAAATTTGGTATTACATAGTAATAAAACTCAAGGTGAAATTGAAAA
AGAACTTGATAAATTGTGTAATATGGTTTCTCCACGTTATAAACCAACATGTGATAGCAT
TGTTTCTGTATACACAACTGAAATTATACAATTAATTTTAAATAAAGAAACACCGGATTT
AATTTGTAAAGAGATAAAAGTATGTACAACTGAATGGGAAATTAATACAACAAAATTATT
TTCAAAAATTACTGAAATTGCCATGAAAGAAATTCATTCAGTAGCTCAAAAATCAAAATC
ACATCAATTAACTCAAAATAATTTAAGATCTACAAGTGAGTGTGAAATTTGTCAAGTATT
TGTTAGTAAATTGGAATCAXXXXXXXXXX

i*yhfivilif*RNNKKKKKKKKKMKILILLFLCILSLCYASNLDSIKANPTECEACQIV
IGYVENLVLHSNKTQGEIEKELDKLCNMVSPRYKPTCDSIVSVYTTEIIQLILNKETPDL
ICKEIKVCTTEWEINTTKLFSKITEIAMKEIHSVAQKSKSHQLTQNNLRSTSECEICQVF
VSKLE---

Frame A:
nlisfycyfdflkkqqkkkkkkkkneniniiifmyfkfmlcikfr*hksksnrm*smsnc
ywlc*kfgit***nsr*n*krt**iv*ygfstl*tnm**hcfcihn*nytinfk*rntgf
nl*rdksmyn*mgn*ynkiifkny*nchernsfssskikitsinsk*fkiyk*v*nlssi
c**igi---


Frame B:
i*yhfivilif*RNNKKKKKKKKKMKILILLFLCILSLCYASNLDSIKANPTECEACQIV
IGYVENLVLHSNKTQGEIEKELDKLCNMVSPRYKPTCDSIVSVYTTEIIQLILNKETPDL
ICKEIKVCTTEWEINTTKLFSKITEIAMKEIHSVAQKSKSHQLTQNNLRSTSECEICQVF
VSKLE---


Frame C:
fniilllf*ffkettkkkkkkkkk*ky*yyyfyvf*vyvmhqi*ia*kqiqqnvkhvkll
lvmlkiwyyiviklkvklkknlincviwflhvinqhvialflytqlklyn*f*ikkhri*
fvkr*kyvqlngkliqqnyfqkllklp*kkfiq*lknqnhin*lkii*dlqvsvkfvkyl
lvnwn---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI464 (SSI464Q) /CSM/SS/SSI4-C/SSI464Q.Seq.d/                        961   0.0
SSG486 (SSG486Q) /CSM/SS/SSG4-D/SSG486Q.Seq.d/                        961   0.0
SSA584 (SSA584Q) /CSM/SS/SSA5-D/SSA584Q.Seq.d/                        954   0.0
CHG343 (CHG343Q) /CSM/CH/CHG3-B/CHG343Q.Seq.d/                        882   0.0
SSE768 (SSE768Q) /CSM/SS/SSE7-C/SSE768Q.Seq.d/                        856   0.0
SSE882 (SSE882Q) /CSM/SS/SSE8-D/SSE882Q.Seq.d/                        809   0.0
SSE760 (SSE760Q) /CSM/SS/SSE7-C/SSE760Q.Seq.d/                        767   0.0
SSL531 (SSL531Q) /CSM/SS/SSL5-B/SSL531Q.Seq.d/                        644   0.0
SSD258 (SSD258Q) /CSM/SS/SSD2-C/SSD258Q.Seq.d/                        642   0.0
SSF545 (SSF545Q) /CSM/SS/SSF5-B/SSF545Q.Seq.d/                        638   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    42  6e-05  9
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38  1e-04  8
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    34  2e-04  8
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    46  2e-04  7
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38  4e-04  6
BZ425870|BZ425870.1 BONIK77TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONIK77, DNA sequence.    56  5e-04  1
BH447422|BH447422.1 BOHKP77TF BOHK Brassica oleracea genomic clone BOHKP77, DNA sequence.    56  5e-04  1
BZ516801|BZ516801.1 BOMQA38TF BO_2_3_KB Brassica oleracea genomic clone BOMQA38, DNA sequence.    56  5e-04  1
BZ451883|BZ451883.1 BONDH35TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONDH35, DNA sequence.    56  5e-04  1
BH920490|BH920490.1 odi03d01.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    56  5e-04  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m...    64   2e-09
BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protei...    61   2e-08
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147...    61   2e-08
AC115608_3(AC115608|pid:none) Dictyostelium discoideum chromosom...    60   3e-08
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210...    60   5e-08
CR855698_1(CR855698|pid:none) Xenopus tropicalis finished cDNA, ...    59   1e-07
BT058972_1(BT058972|pid:none) Salmo salar clone ssal-rgf-517-167...    59   1e-07
AF196309_1(AF196309|pid:none) Naegleria fowleri naegleriapore B ...    58   2e-07
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ...    57   3e-07
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA...    57   3e-07

 psg: 0.76  gvh: 0.93  alm: 0.22  top: -0.40  tms: 0.07  mit: 0.34  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: Golgi
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSI464 is gol

>SSI464F.Seq
AATTTAATATCATTTTATTGTTATTTTGATTTTTTAAAGAAACAACAAAAAAAAAAAAAA
AAAAAAAAAAAAAATGAAAATATTAATATTATTATTTTTATGTATTTTAAGTTTATGTTA
TGCATCAAATTTAGATAGCATAAAAGCAAATCCAACAGAATGTGAAGCATGTCAAATTGT
TATTGGTTATGTTGAAAATTTGGTATTACATAGTAATAAAACTCAAGGTGAAATTGAAAA
AGAACTTGATAAATTGTGTAATATGGTTTCTCCACGTTATAAACCAACATGTGATAGCAT
TGTTTCTGTATACACAACTGAAATTATACAATTAATTTTAAATAAAGAAACACCGGATTT
AATTTGTAAAGAGATAAAAGTATGTACAACTGAATGGGAAATTAATACAACAAAATTATT
TTCAAAAATTACTGAAATTGCCATGAAAGAAATTCATTCAGTAGCTCAAAAATCAAAATC
ACATCAATTAACTCAAAATAATTTAAGATCTACAAGTGAGTGTGAAATTTGTCAAGTATT
TGTTAGTAAATTGGAATCA----------