>SSI454 (SSI454Q) /CSM/SS/SSI4-C/SSI454Q.Seq.d/
XXXXXXXXXXATAAAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCT
GTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGNNTTGCATTACTCTCCTCAAGCTC
AGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTATCCTCAGGGTTAATCCATCACA
TTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAACAAAAAAAAATATTTAAAAAA
AAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAATTTTAAATATA
AATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGA

---*kkknf*nspstfwcfc*ANAKVSLSPFXLHYSPQAQIISSSTNDAPQVSSGLIHHI
PMQLSQMYKQSLTKKNI*kkkkkkkkky*niffkinfkyk**cffffykkkkekk

Frame A:
---*kkknf*nspstfwcfc*ANAKVSLSPFXLHYSPQAQIISSSTNDAPQVSSGLIHHI
PMQLSQMYKQSLTKKNI*kkkkkkkkky*niffkinfkyk**cffffykkkkekk


Frame B:
---kkkktfktllllfgasvklmlrclspplxcitllklr*srapltmllkypqg*sitf
lcnslkcissl*qkkifkkkkkrkkknikifflksilninnnvffffikkrkkkr


Frame C:
---kkkkllklsfyflvllls*c*gvslplxxallssssdnlelh*rcsssilrvnpshs
yatlsnv*avfnkkkylkkkkkekkkilkyff*nqf*i*iimffffl*kkerkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        375   e-103
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        375   e-103
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        375   e-103
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        375   e-103
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        375   e-103
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        375   e-103
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        375   e-103
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        375   e-103
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        375   e-103
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/                        375   e-103

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   375  e-120  2
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence.    56  3e-04  1
BM094544|BM094544.1 saj17c12.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-2832 5', mRNA sequence.    52  0.005  1
AC120895|AC120895.4 Rattus norvegicus clone CH230-180J3, WORKING DRAFT SEQUENCE, 5 unordered pieces.    50  0.018  1
AB030651|AB030651.1 Felis catus mRNA for B-lymphocyte activation antigen B7-1 (CD80), complete cds.    38  0.036  2
AX348899|AX348899.1 Sequence 357 from Patent WO0202807.           34  0.036  3
AX344490|AX344490.1 Sequence 337 from Patent WO0200926.           34  0.036  3
BH564896|BH564896.1 BOHIQ68TR BOHI Brassica oleracea genomic clone BOHIQ68, DNA sequence.    48  0.070  1
L43882|L43882.1 Ixodes scapularis (isolate 2, strain Georgia 2) mitochondrial 12S ribosomal RNA (12S rDNA) gene fragment.    48  0.070  1
BI745034|BI745034.1 rk95d06.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5', mRNA sequence.    38  0.11  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 221,248,910

 psg: 0.89  gvh: 0.38  alm: 0.53  top: 0.37  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SSI454 is nuc

>SSI454Z.Seq
----------ATAAAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCT
GTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGNNTTGCATTACTCTCCTCAAGCTC
AGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTATCCTCAGGGTTAATCCATCACA
TTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAACAAAAAAAAATATTTAAAAAA
AAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAATTTTAAATATA
AATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGA