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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI451
Library SS
(Link to library)
Clone ID SSI451
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16709-1
Original site URL
Representative seq. ID SSI451Z
(Link to Original site)
Representative DNA sequence 
>SSI451 (SSI451Q) /CSM/SS/SSI4-C/SSI451Q.Seq.d/
XXXXXXXXXXCGTACCAATCTTTGAATATGGTATTTATCGTCCATTGGAAAGAAAGAAGA
TTAATTTCACACTCCTTCGTAGAATGGGTACCGGTATGTTTTTGTCTGTGATTGCATTTT
ACATTTCAGCTATTATTCAAGTTCATATTGATAACTCTCCACCAGAATCTGTACATATCG
CTTTACAAATACCACAATATGTTGTCTTGACTGCCGCTGAAGTTTTATTATCAATCACTG
GTTTAGAATTTGCCTATGCAAATTCACCACGTTCTATGAAATCATTGGTAATTGCAGGTT
GGTTAATTTGTGTTTCCATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTGAAT
TACCAGAATATGTTTTATCATTATTATTTGGTTCTGTAATGTTTGTATTCATCTTTATCT
TTATCATTATTGCCTATAGATTCAAAGAAATTGATCAATCAGTTTTGGATGAATTAAATG
GTGATACTCCAATGACTGATGATAATGCTAATGCTAATTCCAAAGAATTAGATGTTGTAA
CTCAAAAAGATTTATCATCTTCTTCAAATCCAATTATTAATAATAATAACAATAATAATA
ACTCAACTTTGGGTAATAGTATTGATTATGGTTATGATCATGAAAAATCAAATTAATCAA
TTTAAAAATAAAAACACTTTGTATTTTATATTAAAAA
sequence update 1998. 1. 8
Translated Amino Acid sequence 
---VPIFEYGIYRPLERKKINFTLLRRMGTGMFLSVIAFYISAIIQVHIDNSPPESVHIA
LQIPQYVVLTAAEVLLSITGLEFAYANSPRSMKSLVIAGWLICVSIGNMFDAFVIELIEL
PEYVLSLLFGSVMFVFIFIFIIIAYRFKEIDQSVLDELNGDTPMTDDNANANSKELDVVT
QKDLSSSSNPIINNNNNNNNSTLGNSIDYGYDHEKSN*si*k*khfvfyik
Translated Amino Acid sequence (All Frames) 
Frame A:
---VPIFEYGIYRPLERKKINFTLLRRMGTGMFLSVIAFYISAIIQVHIDNSPPESVHIA
LQIPQYVVLTAAEVLLSITGLEFAYANSPRSMKSLVIAGWLICVSIGNMFDAFVIELIEL
PEYVLSLLFGSVMFVFIFIFIIIAYRFKEIDQSVLDELNGDTPMTDDNANANSKELDVVT
QKDLSSSSNPIINNNNNNNNSTLGNSIDYGYDHEKSN*si*k*khfvfyik


Frame B:
---yqslnmvfivhwkerrlishsfvewvpvcfcl*lhftfqllfkfilitlhqnlyisl
ykyhnmls*lplkfyyqslv*nlpmqihhvl*nhw*lqvg*fvfplviclmll*ln*lny
qnmfyhyylvl*clysslslsllpidskklinqfwmn*mvilq*lmimlmlipkn*ml*l
kkiyhllqiqlliiitiiitqlwvivlimvmimknqinqfknkntlyfilk


Frame C:
---tnl*iwylssigkked*fhtps*ngyryvfvcdcilhfsyysssy**lstrictyrf
tntticcldcr*sfiinhwfriclckfttfyeiigncrlvnlcfhw*yv*cfcn*in*it
ricfiiiiwfcnvcihlylyhycl*iqrn*sisfg*ikw*ysnd***c*c*fqrirccns
krfiiffksny****q***lnfg**y*lwl*s*kiklinlkiktlcily*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFG459 (VFG459Q) /CSM/VF/VFG4-C/VFG459Q.Seq.d/                       1124   0.0
SSJ806 (SSJ806Q) /CSM/SS/SSJ8-A/SSJ806Q.Seq.d/                       1124   0.0
SSI451 (SSI451Q) /CSM/SS/SSI4-C/SSI451Q.Seq.d/                       1124   0.0
SSF437 (SSF437Q) /CSM/SS/SSF4-B/SSF437Q.Seq.d/                       1124   0.0
SFF215 (SFF215Q) /CSM/SF/SFF2-A/SFF215Q.Seq.d/                       1124   0.0
SFD148 (SFD148Q) /CSM/SF/SFD1-B/SFD148Q.Seq.d/                       1124   0.0
CHA272 (CHA272Q) /CSM/CH/CHA2-C/CHA272Q.Seq.d/                       1124   0.0
CFI809 (CFI809Q) /CSM/CF/CFI8-A/CFI809Q.Seq.d/                       1124   0.0
CFI287 (CFI287Q) /CSM/CF/CFI2-D/CFI287Q.Seq.d/                       1124   0.0
CFC357 (CFC357Q) /CSM/CF/CFC3-C/CFC357Q.Seq.d/                       1124   0.0
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.  1124  0.0  3
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   141  8e-41  9
BU496155|BU496155.1 PfESToac04e11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    44  0.008  2
CB073465|CB073465.1 taa18c12.x1 Hydra EST -II Hydra vulgaris cDNA 3' similar to SW:OPT1_CAEEL Q17758 HYPOTHETICAL OLIGOPEPTIDE TRANSPORTER C06G8.2. [2] TR:O76185 ;, mRNA sequence.    40  0.11  2
AL359673|AL359673.3 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-430N12.    38  0.22  3
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          34  0.23  12
AL591625|AL591625.8 Human DNA sequence from clone RP13-202B6 on chromosome Xp21.1-21.3.    40  0.31  4
U10401|U10401.1 Caenorhabditis elegans cosmid T20B12.    38  0.32  3
BX324140|BX324140.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-164A13.    46  0.37  4
BX255961|BX255961.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    50  0.45  2
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_27(AC115680|pid:none) Dictyostelium discoideum chromoso...   350   3e-95
CP000769_400(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co...   107   3e-22
CP001032_1516(CP001032|pid:none) Opitutus terrae PB90-1, complet...    94   3e-18
CP001359_4119(CP001359|pid:none) Anaeromyxobacter dehalogenans 2...    94   4e-18
CP000251_4007(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    93   7e-18
CP001131_4097(CP001131|pid:none) Anaeromyxobacter sp. K, complet...    91   3e-17
AY094847_1(AY094847|pid:none) Drosophila melanogaster RE06505 fu...    91   4e-17
AE014297_1025(AE014297|pid:none) Drosophila melanogaster chromos...    91   4e-17
BC124581_1(BC124581|pid:none) Danio rerio solute carrier family ...    89   2e-16
BX548071_2(BX548071|pid:none) Zebrafish DNA sequence from clone ...    89   2e-16
protein update 2009. 6.13
PSORT 

 psg: 0.37  gvh: 0.54  alm: 0.11  top: 0.13  tms: 0.27  mit: 0.22  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 32.0 %: plasma membrane
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: peroxisomal
	  4.0 %: Golgi

>> prediction for SSI451 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI451Z
3' end seq. 
>SSI451Z.Seq
----------CGTACCAATCTTTGAATATGGTATTTATCGTCCATTGGAAAGAAAGAAGA
TTAATTTCACACTCCTTCGTAGAATGGGTACCGGTATGTTTTTGTCTGTGATTGCATTTT
ACATTTCAGCTATTATTCAAGTTCATATTGATAACTCTCCACCAGAATCTGTACATATCG
CTTTACAAATACCACAATATGTTGTCTTGACTGCCGCTGAAGTTTTATTATCAATCACTG
GTTTAGAATTTGCCTATGCAAATTCACCACGTTCTATGAAATCATTGGTAATTGCAGGTT
GGTTAATTTGTGTTTCCATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTGAAT
TACCAGAATATGTTTTATCATTATTATTTGGTTCTGTAATGTTTGTATTCATCTTTATCT
TTATCATTATTGCCTATAGATTCAAAGAAATTGATCAATCAGTTTTGGATGAATTAAATG
GTGATACTCCAATGACTGATGATAATGCTAATGCTAATTCCAAAGAATTAGATGTTGTAA
CTCAAAAAGATTTATCATCTTCTTCAAATCCAATTATTAATAATAATAACAATAATAATA
ACTCAACTTTGGGTAATAGTATTGATTATGGTTATGATCATGAAAAATCAAATTAATCAA
TTTAAAAATAAAAACACTTTGTATTTTATATTAAAAA
Length of 3' end seq. 687
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -