>SSI449 (SSI449Q) /CSM/SS/SSI4-C/SSI449Q.Seq.d/
AAAAAATTAAATAGGAAAAGTAAGAATAGTAATAGTATTTTAAAAATAAAAAAAATAAAA
TAGAAAAAAATAATATAATAAAAATTATAAAAAGCAATAAAAAAAGTTGTACTTATACAT
ATAAAAAAAACTTCAACACAATTTTATATATTTTTTAAAAACTTTACTTAATCTTTAAAA
AAAAAAAATTAATCTAAAAAAAAAAAAAAAGATATATTTTATTTTAAAAATTTTAAATAA
ATCAATAAAAAAAGGATATTTACCAGATAAATATTTTAAGAATATAGATATATATAXXXX
XXXXXX

kik*ek*e***YFKNKKNKIEKNNIIKIIKSNKKSCTYTYKKNFNTILYIF*klylifkk
kkli*kkkkryilf*kf*inq*kkdiyqinilri*iy---

Frame A:
kklnrksknsnsilkikkik*kkii**kl*kaikkvvlihikktstqfyiffknft*slk
kkn*skkkkkdifyfknfk*inkkriftr*if*eyryi---


Frame B:
kn*igkvrivivf*k*kk*nrkk*ynknykkq*kklylyi*kklqhnfiyflktllnl*k
kkinlkkkkkiyfilkilnksikkgylpdkyfknidiy---


Frame C:
kik*ek*e***YFKNKKNKIEKNNIIKIIKSNKKSCTYTYKKNFNTILYIF*klylifkk
kkli*kkkkryilf*kf*inq*kkdiyqinilri*iy---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI449 (SSI449Q) /CSM/SS/SSI4-C/SSI449Q.Seq.d/                        129   3e-29
SSH344 (SSH344Q) /CSM/SS/SSH3-B/SSH344Q.Seq.d/                        121   6e-27
SSF524 (SSF524Q) /CSM/SS/SSF5-A/SSF524Q.Seq.d/                        121   6e-27
SSE773 (SSE773Q) /CSM/SS/SSE7-D/SSE773Q.Seq.d/                        121   6e-27
CHO534 (CHO534Q) /CSM/CH/CHO5-B/CHO534Q.Seq.d/                         46   3e-04
CHJ455 (CHJ455Q) /CSM/CH/CHJ4-C/CHJ455Q.Seq.d/                         46   3e-04
CHG671 (CHG671Q) /CSM/CH/CHG6-C/CHG671Q.Seq.d/                         46   3e-04
CHP880 (CHP880Q) /CSM/CH/CHP8-D/CHP880Q.Seq.d/                         44   0.001
CHL269 (CHL269Q) /CSM/CH/CHL2-C/CHL269Q.Seq.d/                         42   0.005
VSF664 (VSF664Q) /CSM/VS/VSF6-C/VSF664Q.Seq.d/                         40   0.019

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BP190126|BP190126.1 Dugesia japonica cDNA, clone: 03981_HH, expressed in the head.    50  1e-05  3
AL035477|AL035477.6 Plasmodium falciparum MAL4P4.                 44  2e-04  4
BZ458389|BZ458389.1 BONML55TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONML55, DNA sequence.    42  6e-04  2
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    40  0.001  5
AX599046|AX599046.1 Sequence 386 from Patent WO02077272.          34  0.002  5
BZ949403|BZ949403.1 CH240_37H14.TV CHORI-240 Bos taurus genomic clone CH240_37H14, genomic survey sequence.    38  0.002  2
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    44  0.002  6
AF037042|AF037042.2 Dictyostelium discoideum ras-related GTPase RacF1 (racF1) gene, complete cds; tRNA-Glu gene, complete sequence; and unknown genes.    46  0.003  2
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome.    40  0.004  4
AX598900|AX598900.1 Sequence 240 from Patent WO02077272.          34  0.005  5

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 94,492,388

 psg: 0.60  gvh: 0.08  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSI449 is nuc

>SSI449F.Seq
AAAAAATTAAATAGGAAAAGTAAGAATAGTAATAGTATTTTAAAAATAAAAAAAATAAAA
TAGAAAAAAATAATATAATAAAAATTATAAAAAGCAATAAAAAAAGTTGTACTTATACAT
ATAAAAAAAACTTCAACACAATTTTATATATTTTTTAAAAACTTTACTTAATCTTTAAAA
AAAAAAAATTAATCTAAAAAAAAAAAAAAAGATATATTTTATTTTAAAAATTTTAAATAA
ATCAATAAAAAAAGGATATTTACCAGATAAATATTTTAAGAATATAGATATATATA----
------