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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI441
Library SS
(Link to library)
Clone ID SSI441
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16448-1
Original site URL
Representative seq. ID SSI441Z
(Link to Original site)
Representative DNA sequence 
>SSI441 (SSI441Q) /CSM/SS/SSI4-B/SSI441Q.Seq.d/
XXXXXXXXXXTCCAGATTCTGCTGATACTGATTCAATTTTATATGAAGATTGGAAAACTG
TTAATCAAAAAACAATGAATTATTTAAGAAAAATTAATTCTTCACCTTCAAAATTCACTC
CAAATGGTAATCAAATTTGTCTTGGTCAAGTTTCAACAATTTCAACAATTGGTAGTTCAA
CTACAACTGCTTCACAATCAACAACAACAACAACAACTGGAACAGGTTCAACAACTAGTA
AACCAACAACCACTGGTGGATCAGGTTCATCAACAACTACAACTAAACCATCAACAACAA
CAACAACAACAACAACAACCACTGGTGGATCAAGTACAACTGGATCATCAAATGTTAAAG
CAGTTATTAAACAAACTATTAGACAAACTTGGTTTGATGGTACAACTACAAATACTTTGG
TTGATTGTACATTAACCAATCCATCAAGTAGTCCAATTCCTATTCCAAGATTTGCAATTG
ATAAAACTCCATCATCATCTTGGGAATTGAATTTAGTTAGTTCAAATATTGTTTCATTTA
CAAGTTGGAATAACCAAATTAGTCCTGGTCAAACTTTATCATTTGGTTATATTGTTTCTA
GTAGTACTGTAATTACATTTACTCAAATTTAAAAAAAAAAAA
sequence update 1998. 1. 6
Translated Amino Acid sequence 
---PDSADTDSILYEDWKTVNQKTMNYLRKINSSPSKFTPNGNQICLGQVSTISTIGSST
TTASQSTTTTTTGTGSTTSKPTTTGGSGSSTTTTKPSTTTTTTTTTTGGSSTTGSSNVKA
VIKQTIRQTWFDGTTTNTLVDCTLTNPSSSPIPIPRFAIDKTPSSSWELNLVSSNIVSFT
SWNNQISPGQTLSFGYIVSSSTVITFTQI*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---PDSADTDSILYEDWKTVNQKTMNYLRKINSSPSKFTPNGNQICLGQVSTISTIGSST
TTASQSTTTTTTGTGSTTSKPTTTGGSGSSTTTTKPSTTTTTTTTTTGGSSTTGSSNVKA
VIKQTIRQTWFDGTTTNTLVDCTLTNPSSSPIPIPRFAIDKTPSSSWELNLVSSNIVSFT
SWNNQISPGQTLSFGYIVSSSTVITFTQI*kkk


Frame B:
---qilliliqfymkigkllikkq*ii*eklilhlqnslqmvikfvlvkfqqfqqlvvql
qllhnqqqqqqleqvqqlvnqqplvdqvhqqlqlnhqqqqqqqqqplvdqvqldhqmlkq
llnklldklglmvqlqilwlivh*pihqvvqflfqdlqliklhhhlgn*i*lvqilfhlq
vgitklvlvklyhlvilflvvl*lhllkfkkkk


Frame C:
---rfc*y*fnfi*rlenc*sknnelfkkn*fftfkihskw*snlswssfnnfnnw*fny
ncftinnnnnnwnrfnn**tnnhwwirfinnyn*tinnnnnnnnnhwwikynwiikc*ss
y*tny*tnlv*wynykyfg*lyinqsik*snsyskicn**nsiiilgiefs*fkycfiyk
le*pn*swsnfiiwlycf**ycnyiysnlkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI441 (SSI441Q) /CSM/SS/SSI4-B/SSI441Q.Seq.d/                        617   e-176
SSF423 (SSF423Q) /CSM/SS/SSF4-A/SSF423Q.Seq.d/                        611   e-174
SSM763 (SSM763Q) /CSM/SS/SSM7-C/SSM763Q.Seq.d/                        609   e-173
SSK593 (SSK593Q) /CSM/SS/SSK5-D/SSK593Q.Seq.d/                        609   e-173
SSI526 (SSI526Q) /CSM/SS/SSI5-B/SSI526Q.Seq.d/                        609   e-173
SSI228 (SSI228Q) /CSM/SS/SSI2-B/SSI228Q.Seq.d/                        609   e-173
SSI120 (SSI120Q) /CSM/SS/SSI1-A/SSI120Q.Seq.d/                        609   e-173
SSH762 (SSH762Q) /CSM/SS/SSH7-C/SSH762Q.Seq.d/                        609   e-173
SSG285 (SSG285Q) /CSM/SS/SSG2-D/SSG285Q.Seq.d/                        609   e-173
SSG235 (SSG235Q) /CSM/SS/SSG2-B/SSG235Q.Seq.d/                        609   e-173
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC090051|AC090051.8 Homo sapiens 12q BAC RP11-467E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    54  0.019  3
M18162|M18162.1 Pea PSL3 lectin pseudogene.                       44  0.036  2
BU367499|BU367499.1 603784480F1 CSEQCHN72 Gallus gallus cDNA clone ChEST738o19 5', mRNA sequence.    48  0.13  1
Z97185|Z97185.1 S.pombe chromosome I cosmid c16A10.               40  0.23  3
AC143356|AC143356.1 Pan troglodytes chromosome 7 clone RP43-64A13, complete sequence.    38  0.28  4
AC132086|AC132086.2 Mus musculus chromosome UNK clone RP24-556M16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  0.42  4
AF102955|AF102955.1 Pelvetia canaliculata country Isle of Man 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.    46  0.53  1
AF102953|AF102953.1 Pelvetia canaliculata country Norway 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.    46  0.53  1
AF102954|AF102954.1 Pelvetia canaliculata country Portugal 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.    46  0.53  1
U39645|U39645.1 Caenorhabditis elegans cosmid C14F11.    40  1.4  2
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso...    40   0.043
(P14768) RecName: Full=Endo-1,4-beta-xylanase A;          Short=...    39   0.096
CP000282_2268(CP000282|pid:none) Saccharophagus degradans 2-40, ...    38   0.21
CP000934_3210(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    37   0.47
CP000934_1425(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    36   1.1
S19652(S19652;S16849)cellodextrinase C - Pseudomonas fluorescens       35   1.8
CP000511_3449(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1...    35   2.4
CP000656_2982(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...    35   2.4
CP000934_2415(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    34   3.1
BA000001_1206(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ...    34   3.1
protein update 2009. 6.13
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI441 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI441Z
3' end seq. 
>SSI441Z.Seq
----------TCCAGATTCTGCTGATACTGATTCAATTTTATATGAAGATTGGAAAACTG
TTAATCAAAAAACAATGAATTATTTAAGAAAAATTAATTCTTCACCTTCAAAATTCACTC
CAAATGGTAATCAAATTTGTCTTGGTCAAGTTTCAACAATTTCAACAATTGGTAGTTCAA
CTACAACTGCTTCACAATCAACAACAACAACAACAACTGGAACAGGTTCAACAACTAGTA
AACCAACAACCACTGGTGGATCAGGTTCATCAACAACTACAACTAAACCATCAACAACAA
CAACAACAACAACAACAACCACTGGTGGATCAAGTACAACTGGATCATCAAATGTTAAAG
CAGTTATTAAACAAACTATTAGACAAACTTGGTTTGATGGTACAACTACAAATACTTTGG
TTGATTGTACATTAACCAATCCATCAAGTAGTCCAATTCCTATTCCAAGATTTGCAATTG
ATAAAACTCCATCATCATCTTGGGAATTGAATTTAGTTAGTTCAAATATTGTTTCATTTA
CAAGTTGGAATAACCAAATTAGTCCTGGTCAAACTTTATCATTTGGTTATATTGTTTCTA
GTAGTACTGTAATTACATTTACTCAAATTTAAAAAAAAAAAA
Length of 3' end seq. 632
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -