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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI437
Library SS
(Link to library)
Clone ID SSI437
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16278-1
Original site URL
Representative seq. ID SSI437Z
(Link to Original site)
Representative DNA sequence 
>SSI437 (SSI437Q) /CSM/SS/SSI4-B/SSI437Q.Seq.d/
XXXXXXXXXXCCGTTTCTTTGGCAAAAAAAAGATATGAGAATTTTAATGGTCGGTTTAGA
TGCTGCTGGTAAAACCACCATTTTATACAAACTTAAATTAGGTGAAATTGTTACTACAAT
TCCAACCATTGGTTTCAATGTCGAAACTGTCGAATTCAAAAACATTAACTTCACTGTATG
GGATGTTGGTGGTCAAGATAAAATTCGTCCATTATGGAGACATTATTTCCAAAATACTCA
AGGTCTTATCTTTGTTGTTGATTCAAACGATAGAGAAAGAATTCAAGAAGCTTGTGATGA
ACTCACTAAAATGCTCAATGAAGATGAATTACGTGATGCTGTTTTATTAGTTTTCTGTAA
CAAACAAGATCTTCCAAATGCCATGAGTGTCGCTGAAGTTACCGATAAATTAAATCTCCA
CTCTCTCCGTTCAAGAAAATGGTACATACAGTCAACTTGTGCCACCAGTGGTGATGGTTT
ATATGAAGGTTTAGACTGGCTCTCAAATACCTTAACAAGCTCCTCAAAATAAATGACGTA
GGAGGTCAATTTAATAGAGTTTATTAGATTTTTTTAATTATTTAATAATCTAATTAAACT
ACTGTTGTTTAATTTTGAAATAAAAAAAAAAAAAACCTTGTTTATATAAATAATAATAAA
TAAAATAATAATAAAA
sequence update 1998. 1. 6
Translated Amino Acid sequence 
---FLWQKKDMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEFKNINFTVWD
VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNK
QDLPNAMSVAEVTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTLTSSSK*mt*e
vnliefirff*lfnnliklllfnfeikkkktlfi*iiinkiiik
Translated Amino Acid sequence (All Frames) 
Frame A:
---rffgkkki*ef*wsv*mllvkppfytnln*vklllqfqplvsmsklsnsktltslyg
mlvvkikfvhygdiiskilkvlsllliqtiekefkklvmnslkcsmkmnyvmlfy*fsvt
nkifqmp*vslklpin*istlsvqengtysqlvppvvmvymkv*tgsqip*qapqnk*rr
rsi**slldffnylii*lnycclilk*kkkkpclyk***ik***


Frame B:
---vslakkryenfngrfrccw*nhhfiqt*ir*ncyynsnhwfqcrncriqkh*lhcmg
cwwsr*nssimetlfpkysrsylcc*fkr*rknsrsl**th*naq*r*it*ccfisfl*q
trsskchecr*syr*iksplspfkkmvhtvnlchqw*wfi*rfrlalkylnkllkindvg
gqfnrvy*iflii**sn*ttvv*f*nkkkknlvyinnnk*nnnk


Frame C:
---FLWQKKDMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEFKNINFTVWD
VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNK
QDLPNAMSVAEVTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTLTSSSK*mt*e
vnliefirff*lfnnliklllfnfeikkkktlfi*iiinkiiik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI437 (SSI437Q) /CSM/SS/SSI4-B/SSI437Q.Seq.d/                       1128   0.0
SSL154 (SSL154Q) /CSM/SS/SSL1-C/SSL154Q.Seq.d/                       1118   0.0
SSL113 (SSL113Q) /CSM/SS/SSL1-A/SSL113Q.Seq.d/                       1118   0.0
SSK216 (SSK216Q) /CSM/SS/SSK2-A/SSK216Q.Seq.d/                       1118   0.0
SSJ475 (SSJ475Q) /CSM/SS/SSJ4-D/SSJ475Q.Seq.d/                       1118   0.0
SSI674 (SSI674Q) /CSM/SS/SSI6-D/SSI674Q.Seq.d/                       1118   0.0
SSI502 (SSI502Q) /CSM/SS/SSI5-A/SSI502Q.Seq.d/                       1118   0.0
SSG749 (SSG749Q) /CSM/SS/SSG7-C/SSG749Q.Seq.d/                       1118   0.0
SSF795 (SSF795Q) /CSM/SS/SSF7-D/SSF795Q.Seq.d/                       1118   0.0
SSC884 (SSC884Q) /CSM/SS/SSC8-D/SSC884Q.Seq.d/                       1118   0.0
own update 2000. 8.29
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ000063|AJ000063.1 Dictyostelium discoideum mRNA for ADP-ribosylation factor 1.  1065  0.0  3
BX550028|BX550028.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse110e05_q1c.   222  9e-59  2
BG225964|BG225964.1 kp44b08.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to gb:M36341 ADP-RIBOSYLATION FACTOR 4 (HUMAN);, mRNA sequence.   174  6e-50  3
AI187662|AI187662.1 EST485 Manduca sexta male antennae Uni-ZAP XR library Manduca sexta cDNA clone pMsmaD225 5' similar to ADP-ribosylation factor 1, mRNA sequence.   208  6e-50  1
CD524199|CD524199.1 ku97c01.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:ARF1_DROME P35676 ADP-RIBOSYLATION FACTOR 1. [1] ;, mRNA sequence.   192  7e-50  2
BI073736|BI073736.1 kt34c04.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:ARF1_CAEEL Q10943 ADP-RIBOSYLATION FACTOR 1. [1] ;, mRNA sequence.   192  1e-48  2
CA302382|CA302382.1 taa14c04.y1 Hydra cDNA library Hydra magnipapillata cDNA 5' similar to SW:ARF2_MOUSE P16500 ADP-RIBOSYLATION FACTOR 2. ;, mRNA sequence.   155  4e-46  3
AB001051|AB001051.1 Dugesia japonica mRNA for ADP-ribosylation factor, complete cds.   170  4e-46  4
CD525279|CD525279.1 kw14d01.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:ARF1_DROME P35676 ADP-RIBOSYLATION FACTOR 1. [1] ;, mRNA sequence.   176  4e-45  2
AI727428|0   168  1e-42  2
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O00909) RecName: Full=ADP-ribosylation factor 1;  &AJ000063_1(A...   342   8e-93
(P91924) RecName: Full=ADP-ribosylation factor;  &AB001051_1(AB0...   305   1e-81
AC135465_4(AC135465|pid:none) Medicago truncatula clone mth2-24h...   303   2e-81
(Q06396) RecName: Full=ADP-ribosylation factor 1; AltName: Full=...   303   2e-81
AP003570_13(AP003570|pid:none) Oryza sativa Japonica Group genom...   303   3e-81
(O48649) RecName: Full=ADP-ribosylation factor 1;  &AB003377_1(A...   303   3e-81
BT065309_1(BT065309|pid:none) Zea mays full-length cDNA clone ZM...   303   3e-81
(P51821) RecName: Full=ADP-ribosylation factor 1;  &S66337(S6633...   303   4e-81
AK226308_1(AK226308|pid:none) Arabidopsis thaliana mRNA for simi...   302   5e-81
EF144975_1(EF144975|pid:none) Populus trichocarpa clone WS0111_E...   302   5e-81
protein update 2009. 6.13
PSORT 

 psg: 0.84  gvh: 0.36  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SSI437 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI437Z
3' end seq. 
>SSI437Z.Seq
----------CCGTTTCTTTGGCAAAAAAAAGATATGAGAATTTTAATGGTCGGTTTAGA
TGCTGCTGGTAAAACCACCATTTTATACAAACTTAAATTAGGTGAAATTGTTACTACAAT
TCCAACCATTGGTTTCAATGTCGAAACTGTCGAATTCAAAAACATTAACTTCACTGTATG
GGATGTTGGTGGTCAAGATAAAATTCGTCCATTATGGAGACATTATTTCCAAAATACTCA
AGGTCTTATCTTTGTTGTTGATTCAAACGATAGAGAAAGAATTCAAGAAGCTTGTGATGA
ACTCACTAAAATGCTCAATGAAGATGAATTACGTGATGCTGTTTTATTAGTTTTCTGTAA
CAAACAAGATCTTCCAAATGCCATGAGTGTCGCTGAAGTTACCGATAAATTAAATCTCCA
CTCTCTCCGTTCAAGAAAATGGTACATACAGTCAACTTGTGCCACCAGTGGTGATGGTTT
ATATGAAGGTTTAGACTGGCTCTCAAATACCTTAACAAGCTCCTCAAAATAAATGACGTA
GGAGGTCAATTTAATAGAGTTTATTAGATTTTTTTAATTATTTAATAATCTAATTAAACT
ACTGTTGTTTAATTTTGAAATAAAAAAAAAAAAAACCTTGTTTATATAAATAATAATAAA
TAAAATAATAATAAAA
Length of 3' end seq. 666
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -