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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI434
Library SS
(Link to library)
Clone ID SSI434
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14514-1
Original site URL
Representative seq. ID SSI434E
(Link to Original site)
Representative DNA sequence 
>SSI434 (SSI434Q) /CSM/SS/SSI4-B/SSI434Q.Seq.d/
CAAAAAATTAATTTACAACTATAAAAAAAAAAAAAATATATTACAATGAGATTGGTTTTT
GGTTTAATAATTATAGTTTTTTCAATATTTTTATTTAAATCATGTGAGGCCAATGGACCA
ACACCTCAAAGATGTAAAGATGCATTATTAACTTATTTTGTAAATAATCAAAATAATGGT
ATTCAAATTTCATATGTTGATCCAAATGGTAAAATTATATATGCCAGAGGTAATTCAATG
ACAGCACCATTATTTTCAAATGATTTATCAAATACTGATGGATATATTGCACTTTCATTA
ATTCAATGAAGATTGTTTTGCAGGTAAAACTCAACCATTCTCAGATCAGAGAACAGTTGA
TTATGACTCACGTTCATTTCGTATAACTCGTGATGGTCAAGTAACAATTAATAATGAGGG
TAAAAGTAGAGTTTTCAATATCACCGATTGTAGTACAAATGTATTCAATGGTTATTCNGA
TGAGGGTAGATTATACGCTTTTCACATAGCTTCTAAAAAAAGATACCAAGCTGTTGCAAG
TTTATGTTCAATTCAAACTTCTCCACCAACTACAACTGGTGGAAATGGAAATGGAAATGG
TGGTAATATTGGTGATGCTATAATTGAATCAAAAATTAATAGTAAATGGGTCGATAGTGG
TATTAATTATATGGATATTAGTTTGAAAATTACAAATAATGGGCTAAATGATATTAGAAA
ATTATCATTTTCAAGTGATACACCACTTAGAAATTTACAATCTGCTTGGAGTATCATAGC
AAATTCTTTAACTGAGTTTTCATTACCAAATGATGTTGTTATTACACCTTCTTCAATTTA
TCATTTCAGTTTAATCGTAATTGGTACTATAAATCCAAATTATAATGTAATTTCAATTAA
TTAAAAAAAAAAATAAAATAAAATAAAAAAAAAAAAAGGTAATGTTTAATTATAAAGAAA
TAAAAATAAATAAATAACAAAAGAATTTTAAAAAAAAA
sequence update 1999. 4.21
Translated Amino Acid sequence 
kkliynykkkknilq*dwflv**l*ffqyfylnhvrpmdqhlkdvkmhy*lil*iikimv
fkfhmliqmvklympeviq*qhhyfqmiyqilmdilhfh*FNEDCFAGKTQPFSDQRTVD
YDSRSFRITRDGQVTINNEGKSRVFNITDCSTNVFNGYSDEGRLYAFHIASKKRYQAVAS
LCSIQTSPPTTTGGNGNGNGGNIGDAIIESKINSKWVDSGINYMDISLKITNNGLNDIRK
LSFSSDTPLRNLQSAWSIIANSLTEFSLPNDVVITPSSIYHFSLIVIGTINPNYNVISIN
*kkk*nkikkkkgnv*l*rnknk*itkef*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
qkinlql*kkkkyitmrlvfgliiivfsiflfksceangptpqrckdalltyfvnnqnng
iqisyvdpngkiiyargnsmtaplfsndlsntdgyialsliq*rlfcr*nstilrsens*
l*ltfisyns*wssnn***g*k*sfqyhrl*ykciqwlfx*g*iirfshsf*kkipscck
fmfnsnfstnynwwkwkwkww*yw*cyn*ikn***mgr*wy*lygy*fenyk*wak*y*k
iiifk*ytt*kfticleyhskffn*vfitk*ccyytffnlsfqfnrnwyykskl*cnfn*
lkkkik*nkkkkr*cliikk*k*innkrilkk


Frame B:
kkliynykkkknilq*dwflv**l*ffqyfylnhvrpmdqhlkdvkmhy*lil*iikimv
fkfhmliqmvklympeviq*qhhyfqmiyqilmdilhfh*FNEDCFAGKTQPFSDQRTVD
YDSRSFRITRDGQVTINNEGKSRVFNITDCSTNVFNGYSDEGRLYAFHIASKKRYQAVAS
LCSIQTSPPTTTGGNGNGNGGNIGDAIIESKINSKWVDSGINYMDISLKITNNGLNDIRK
LSFSSDTPLRNLQSAWSIIANSLTEFSLPNDVVITPSSIYHFSLIVIGTINPNYNVISIN
*kkk*nkikkkkgnv*l*rnknk*itkef*kk


Frame C:
kn*fttikkkkiyyneigfwfnnysffnifi*im*gqwtntskm*rciinlfck*sk*wy
snfic*skw*nyicqr*fndstiifk*fiky*wiyctfinsmkivlqvklnhsqireqli
mthvhfv*lvmvk*qlimrvkvefsispivvqmysmvixmrvdytlft*llkkdtkllqv
yvqfkllhqlqlvemememvvilvml*lnqklivngsivvliiwilv*klqimg*milen
yhfqvihhleiynllgvs*qil*lsfhyqmmlllhllqfiisv*s*lvl*iqiim*fqli
kkknkik*kkkkvmfnykeikink*qknfkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI434 (SSI434Q) /CSM/SS/SSI4-B/SSI434Q.Seq.d/                       1550   0.0
SFD880 (SFD880Q) /CSM/SF/SFD8-D/SFD880Q.Seq.d/                        664   0.0
SSB669 (SSB669Q) /CSM/SS/SSB6-C/SSB669Q.Seq.d/                        343   3e-93
SHJ738 (SHJ738Q) /CSM/SH/SHJ7-B/SHJ738Q.Seq.d/                        208   1e-52
SHC724 (SHC724Q) /CSM/SH/SHC7-A/SHC724Q.Seq.d/                         44   0.004
SFL430 (SFL430Q) /CSM/SF/SFL4-B/SFL430Q.Seq.d/                         44   0.004
CHR849 (CHR849Q) /CSM/CH/CHR8-C/CHR849Q.Seq.d/                         44   0.004
CHQ789 (CHQ789Q) /CSM/CH/CHQ7-D/CHQ789Q.Seq.d/                         44   0.004
CHQ108 (CHQ108Q) /CSM/CH/CHQ1-A/CHQ108Q.Seq.d/                         44   0.004
CHP262 (CHP262Q) /CSM/CH/CHP2-C/CHP262Q.Seq.d/                         44   0.004
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF482963|AF482963.1 Dictyostelium discoideum arsenite transport subunit A (arsA) gene, complete cds.   640  0.0  8
B58509|B58509.1 CIT-HSP-2013C11.TR CIT-HSP Homo sapiens genomic clone 2013C11, DNA sequence.    38  0.037  2
AC012926|AC012926.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    50  0.055  1
T75752|T75752.1 10530 Lambda-PRL2 Arabidopsis thaliana cDNA clone 144C24T7, mRNA sequence.    50  0.055  1
CC794909|CC794909.1 SALK_058308.54.35.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_058308.54.35.x, genomic survey sequence.    50  0.055  1
AV527980|AV527980.1 Arabidopsis thaliana cDNA clone:APZ48f10R, 5' end.    50  0.055  1
BT010489|BT010489.1 Arabidopsis thaliana At1g49230 gene, complete cds.    50  0.055  1
AL442183|AL442183.4 Human chromosome 14 DNA sequence BAC R-477N13 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    40  0.17  4
AF362371|AF362371.1 Dictyostelium discoideum histidine kinase DhkI (dhkI) gene, complete cds.    34  0.18  4
AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    44  0.22  7
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116960_12(AC116960|pid:none) Dictyostelium discoideum chromoso...    41   6e-07
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    39   0.21
(Q54J71) RecName: Full=Frizzled and smoothened-like protein G; F...    35   3.1
CP000393_2260(CP000393|pid:none) Trichodesmium erythraeum IMS101...    34   9.0
protein update 2009. 7. 8
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SSI434 is cyt
5' end seq. ID SSI434F
5' end seq. 
>SSI434F.Seq
CAAAAAATTAATTTACAACTATAAAAAAAAAAAAAATATATTACAATGAGATTGGTTTTT
GGTTTAATAATTATAGTTTTTTCAATATTTTTATTTAAATCATGTGAGGCCAATGGACCA
ACACCTCAAAGATGTAAAGATGCATTATTAACTTATTTTGTAAATAATCAAAATAATGGT
ATTCAAATTTCATATGTTGATCCAAATGGTAAAATTATATATGCCAGAGGTAATTCAATG
ACAGCACCATTATTTTCAAATGATTTATCAAATACTGATGGATATATTGCACTTTCATTA
ATTCAATGAAGATTGTTTTGCAGGTAAAACTCAACCATTCTCAGATCAGAGAACAGTTGA
AGGATTTTATGACTCACGTTCATTTCGTATAACTCGTGATGGTCAAGTAACAATTAANAA
NNANGGTAAAAGTAGAGTTTTCAATATCACCGATTGTAGTACAAATGTATTCAATGGTTA
TTCCGATGAGGGTAGATTATACGCTTTTCACATAGCTTCTAAAAAAAGATACCAAGCTGT
TGCAAGTTTATGTTCAATTCAAACTTCTCCACCAACTACAACTGG----------
Length of 5' end seq. 585
3' end seq. ID SSI434Z
3' end seq. 
>SSI434Z.Seq
----------TTATGACTCACGTTCATTTCGTATAACTCGTGATGGTCAAGTAACAATTA
ATAATGAGGGTAAAAGTAGAGTTTTCAATATCACCGATTGTAGTACAAATGTATTCAATG
GTTATTCTGATGAGGGTAGATTATACGCTTTTCACATAGCTTCTAAAAAAAGATACCAAG
CTGTTGCAAGTTTATGTTCAATTCAAACTTCTCCACCAACTACAACTGGAAATGGAAATG
GAAATGGTGGTAATATTGGTGATGCTATAATTGAATCAAAAATTAATAGTAAATGGGTCG
ATAGTGGTATTAATTATATGGATATTAGTTTGAAAATTACAAATAATGGGCTAAATGATA
TTAGAAAATTATCATTTTCAAGTGATACACCACTTAGAAATTTACAATCTGCTTGGAGTA
TCATAGCAAATTCTTTAACTGAGTTTTCATTACCAAATGATGTTGTTATTACACCTTCTT
CAATTTATCATTTCAGTTTAATCGTAATTGGTACTATAAATCCAAATTATAATGTAATTT
CAATTAATTAAAAAAAAAAATAAAATAAAATAAAAAAAAAAAAAGGTAATGTTTAATTAT
AAAGAAATAAAAATAAATAAATAACAAAAGAATTTTAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 645
Connected seq. ID SSI434P
Connected seq. 
>SSI434P.Seq
CAAAAAATTAATTTACAACTATAAAAAAAAAAAAAATATATTACAATGAGATTGGTTTTT
GGTTTAATAATTATAGTTTTTTCAATATTTTTATTTAAATCATGTGAGGCCAATGGACCA
ACACCTCAAAGATGTAAAGATGCATTATTAACTTATTTTGTAAATAATCAAAATAATGGT
ATTCAAATTTCATATGTTGATCCAAATGGTAAAATTATATATGCCAGAGGTAATTCAATG
ACAGCACCATTATTTTCAAATGATTTATCAAATACTGATGGATATATTGCACTTTCATTA
ATTCAATGAAGATTGTTTTGCAGGTAAAACTCAACCATTCTCAGATCAGAGAACAGTTGA
AGGATTTTATGACTCACGTTCATTTCGTATAACTCGTGATGGTCAAGTAACAATTAANAA
NNANGGTAAAAGTAGAGTTTTCAATATCACCGATTGTAGTACAAATGTATTCAATGGTTA
TTCCGATGAGGGTAGATTATACGCTTTTCACATAGCTTCTAAAAAAAGATACCAAGCTGT
TGCAAGTTTATGTTCAATTCAAACTTCTCCACCAACTACAACTGG----------TTATG
ACTCACGTTCATTTCGTATAACTCGTGATGGTCAAGTAACAATTAATAATGAGGGTAAAA
GTAGAGTTTTCAATATCACCGATTGTAGTACAAATGTATTCAATGGTTATTCTGATGAGG
GTAGATTATACGCTTTTCACATAGCTTCTAAAAAAAGATACCAAGCTGTTGCAAGTTTAT
GTTCAATTCAAACTTCTCCACCAACTACAACTGGAAATGGAAATGGAAATGGTGGTAATA
TTGGTGATGCTATAATTGAATCAAAAATTAATAGTAAATGGGTCGATAGTGGTATTAATT
ATATGGATATTAGTTTGAAAATTACAAATAATGGGCTAAATGATATTAGAAAATTATCAT
TTTCAAGTGATACACCACTTAGAAATTTACAATCTGCTTGGAGTATCATAGCAAATTCTT
TAACTGAGTTTTCATTACCAAATGATGTTGTTATTACACCTTCTTCAATTTATCATTTCA
GTTTAATCGTAATTGGTACTATAAATCCAAATTATAATGTAATTTCAATTAATTAAAAAA
AAAAATAAAATAAAATAAAAAAAAAAAAAGGTAATGTTTAATTATAAAGAAATAAAAATA
AATAAATAACAAAAGAATTTTAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1230
Full length Seq ID SSI434E
Full length Seq. 
>SSI434E.Seq
CAAAAAATTAATTTACAACTATAAAAAAAAAAAAAATATATTACAATGAGATTGGTTTTT
GGTTTAATAATTATAGTTTTTTCAATATTTTTATTTAAATCATGTGAGGCCAATGGACCA
ACACCTCAAAGATGTAAAGATGCATTATTAACTTATTTTGTAAATAATCAAAATAATGGT
ATTCAAATTTCATATGTTGATCCAAATGGTAAAATTATATATGCCAGAGGTAATTCAATG
ACAGCACCATTATTTTCAAATGATTTATCAAATACTGATGGATATATTGCACTTTCATTA
ATTCAATGAAGATTGTTTTGCAGGTAAAACTCAACCATTCTCAGATCAGAGAACAGTTGA
TTATGACTCACGTTCATTTCGTATAACTCGTGATGGTCAAGTAACAATTAATAATGAGGG
TAAAAGTAGAGTTTTCAATATCACCGATTGTAGTACAAATGTATTCAATGGTTATTCNGA
TGAGGGTAGATTATACGCTTTTCACATAGCTTCTAAAAAAAGATACCAAGCTGTTGCAAG
TTTATGTTCAATTCAAACTTCTCCACCAACTACAACTGGTGGAAATGGAAATGGAAATGG
TGGTAATATTGGTGATGCTATAATTGAATCAAAAATTAATAGTAAATGGGTCGATAGTGG
TATTAATTATATGGATATTAGTTTGAAAATTACAAATAATGGGCTAAATGATATTAGAAA
ATTATCATTTTCAAGTGATACACCACTTAGAAATTTACAATCTGCTTGGAGTATCATAGC
AAATTCTTTAACTGAGTTTTCATTACCAAATGATGTTGTTATTACACCTTCTTCAATTTA
TCATTTCAGTTTAATCGTAATTGGTACTATAAATCCAAATTATAATGTAATTTCAATTAA
TTAAAAAAAAAAATAAAATAAAATAAAAAAAAAAAAAGGTAATGTTTAATTATAAAGAAA
TAAAAATAAATAAATAACAAAAGAATTTTAAAAAAAAA
Length of full length seq. 998