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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI430
Library SS
(Link to library)
Clone ID SSI430
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15679-1
Original site URL
Representative seq. ID SSI430P
(Link to Original site)
Representative DNA sequence 
>SSI430 (SSI430Q) /CSM/SS/SSI4-B/SSI430Q.Seq.d/
CCATGATATTGATATCTCTTTGTCTGATAATTGGGGTTTCATCGATACCGATGTATCATT
AAGATATAAAGCCGAAGGTAGAATTCATCATGGTGTCTCAAAGAATAATTGTATAGTTCA
ACAACCATTGGATCGTTATCGTGTCGATTGTTTTATTTTCGTTGTTTCCATTAGAAGTTT
CGGTGATAAAGATTCTATGGCAAAAATTGAAAAGAAAATTAGAGAAGTTATTGATATGGG
TATCACTCCTTTATTAGCTATTACTTTTGTTGATGCTCTTTCTAAAAATCAATTTCAAGA
ACTCATTAGAACCAGAGGTGAATTATCAGTTCAAGAATCTAATACCTTTATCATCAATAA
CTATACTGAAAAGGAAACTCATAGAGATATCTCTAAAGATATTCAATATCTTAGATTATT
AACAAAAGCTGTTCAATTATGTAAAATTTTAAAAGAAAAGCAAGCAATGAATAAATTAAA
AGCTTTATCAATTGATGAAAATAATAATCCAACACCTGTTAAAAATCAACAACCATCATC
ATTTTTTGGTGAATGTTCTTCAACCTTCACTTCTCCAAATAAATCGTTTCAAAGTCCAAT
GACTGGATCTCCAATGCAAACTCGTCAXXXXXXXXXXTCCTCNTCTNNTAAACCCTCTGA
ACAACCCGATTCCATTAAATTAGTATTAAAGAAGAAATTAAGATTATAAAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATCTCTATTATTTATTTTTTTAAAT
AGTTAATAAATTTAGTGTAATTTTCAAA
sequence update 1998.11.10
Translated Amino Acid sequence 
HDIDISLSDNWGFIDTDVSLRYKAEGRIHHGVSKNNCIVQQPLDRYRVDCFIFVVSIRSF
GDKDSMAKIEKKIREVIDMGITPLLAITFVDALSKNQFQELIRTRGELSVQESNTFIINN
YTEKETHRDISKDIQYLRLLTKAVQLCKILKEKQAMNKLKALSIDENNNPTPVKNQQPSS
FFGECSSTFTSPNKSFQSPMTGSPMQTR---

---SSSXKPSEQPDSIKLVLKKKLRL*nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnlyylff*ivnkfsvifk
Translated Amino Acid sequence (All Frames) 
Frame A:
p*y*ylfv**lgfhryrciiki*srr*nsswclke*lyssttigslscrlfyfrcfh*kf
r**rfygkn*ken*rsy*ygyhsfisyyfc*csf*ksisrth*nqr*iissri*ylyhq*
ly*kgns*ryl*rysis*iinkscsim*nfkrkasne*iksfin**k**sntc*ksttii
ifw*mffnlhfsk*ivsksndwisnanss---

---SSSXKPSEQPDSIKLVLKKKLRL*nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnlyylff*ivnkfsvifk

Frame B:
HDIDISLSDNWGFIDTDVSLRYKAEGRIHHGVSKNNCIVQQPLDRYRVDCFIFVVSIRSF
GDKDSMAKIEKKIREVIDMGITPLLAITFVDALSKNQFQELIRTRGELSVQESNTFIINN
YTEKETHRDISKDIQYLRLLTKAVQLCKILKEKQAMNKLKALSIDENNNPTPVKNQQPSS
FFGECSSTFTSPNKSFQSPMTGSPMQTR---

---pxlxnplnnpipln*y*rrn*dykiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiisiiyffk*linlv*fs

Frame C:
milislcliigvssipmyh*dikpkvefimvsqriiv*fnnhwivivsivlfslfplevs
vikilwqklkrkleklliwvslly*lllllmlflkinfknslepevnyqfknliplssit
ilkrklieislkifnildy*qklfnyvkf*kkskq*in*klyqlmkiiiqhllkinnhhh
flvnvlqpsllqinrfkvq*ldlqcklv---

---lxx*tl*ttrfh*isikeeikiik*********************************
**sllfiflns**i*cnfq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI430 (SSI430Q) /CSM/SS/SSI4-B/SSI430Q.Seq.d/                       1320   0.0
AFA538 (AFA538Q) /CSM/AF/AFA5-B/AFA538Q.Seq.d/                       1003   0.0
AHM662 (AHM662Q) /CSM/AH/AHM6-C/AHM662Q.Seq.d/                        682   0.0
AHQ803 (AHQ803Q) /CSM/AH/AHQ8-A/AHQ803Q.Seq.d/                        535   e-151
SSM610 (SSM610Q) /CSM/SS/SSM6-A/SSM610Q.Seq.d/                        396   e-109
AHQ848 (AHQ848Q) /CSM/AH/AHQ8-B/AHQ848Q.Seq.d/                        157   3e-37
SLG481 (SLG481Q) /CSM/SL/SLG4-D/SLG481Q.Seq.d/                        155   1e-36
SHG349 (SHG349Q) /CSM/SH/SHG3-C/SHG349Q.Seq.d/                        155   1e-36
SHA707 (SHA707Q) /CSM/SH/SHA7-A/SHA707Q.Seq.d/                        155   1e-36
CHP838 (CHP838Q) /CSM/CH/CHP8-B/CHP838Q.Seq.d/                        155   1e-36
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   115  4e-28  8
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38  0.027  9
BX556172|BX556172.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse25d06_p1c.    48  0.18  1
BX551247|BX551247.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse117d11_p1c.    48  0.18  1
BX558656|BX558656.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse39h08_p1c.    48  0.18  1
BX565470|BX565470.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse77g01_p1c.    48  0.18  1
BX562491|BX562491.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse61a03_q1c.    48  0.18  1
BX562436|BX562436.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse60f08_p1c.    48  0.18  1
AL929146|AL929146.10 Zebrafish DNA sequence from clone CH211-117A23.    36  0.19  6
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    34  0.20  10
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_17(AC116305|pid:none) Dictyostelium discoideum chromoso...   238   2e-61
AJ299405_1(AJ299405|pid:none) Mus musculus mRNA for microtubule ...    40   0.13
(Q8BV66) RecName: Full=Interferon-induced protein 44; AltName: F...    40   0.13
AY249914_1(AY249914|pid:none) Coxiella burnetii strain Henzerlin...    38   0.49
AY249913_1(AY249913|pid:none) Coxiella burnetii strain Xinqiao 3...    38   0.49
CP001019_1711(CP001019|pid:none) Coxiella burnetii CbuG_Q212, co...    38   0.49
CP000733_1824(CP000733|pid:none) Coxiella burnetii Dugway 5J108-...    38   0.49
(Q54U65) RecName: Full=Seven transmembrane domain-containing ser...    36   1.4
AB164628_1(AB164628|pid:none) Eptatretus burgeri hfpi mRNA for p...    35   3.2
FM992695_827(FM992695|pid:none) Candida dubliniensis CD36 chromo...    35   4.2
protein update 2009. 6.13
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SSI430 is nuc
5' end seq. ID SSI430F
5' end seq. 
>SSI430F.Seq
CCATGATATTGATATCTCTTTGTCTGATAATTGGGGTTTCATCGATACCGATGTATCATT
AAGATATAAAGCCGAAGGTAGAATTCATCATGGTGTCTCAAAGAATAATTGTATAGTTCA
ACAACCATTGGATCGTTATCGTGTCGATTGTTTTATTTTCGTTGTTTCCATTAGAAGTTT
CGGTGATAAAGATTCTATGGCAAAAATTGAAAAGAAAATTAGAGAAGTTATTGATATGGG
TATCACTCCTTTATTAGCTATTACTTTTGTTGATGCTCTTTCTAAAAATCAATTTCAAGA
ACTCATTAGAACCAGAGGTGAATTATCAGTTCAAGAATCTAATACCTTTATCATCAATAA
CTATACTGAAAAGGAAACTCATAGAGATATCTCTAAAGATATTCAATATCTTAGATTATT
AACAAAAGCTGTTCAATTATGTAAAATTTTAAAAGAAAAGCAAGCAATGAATAAATTAAA
AGCTTTATCAATTGATGAAAATAATAATCCAACACCTGTTAAAAATCAACAACCATCATC
ATTTTTTGGTGAATGTTCTTCAACCTTCACTTCTCCAAATAAATCGTTTCAAAGTCCAAT
GACTGGATCTCCAATGCAAACTCGTCA----------
Length of 5' end seq. 627
3' end seq. ID SSI430Z
3' end seq. 
>SSI430Z.Seq
----------TCCTCNTCTNNTAAACCCTCTGAACAACCCGATTCCATTAAATTAGTATT
AAAGAAGAAATTAAGATTATAAAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATCTCTATTATTTATTTTTTTAAATAGTTAATAAATTTAGTGTAATTTTCAA
A
Length of 3' end seq. 231
Connected seq. ID SSI430P
Connected seq. 
>SSI430P.Seq
CCATGATATTGATATCTCTTTGTCTGATAATTGGGGTTTCATCGATACCGATGTATCATT
AAGATATAAAGCCGAAGGTAGAATTCATCATGGTGTCTCAAAGAATAATTGTATAGTTCA
ACAACCATTGGATCGTTATCGTGTCGATTGTTTTATTTTCGTTGTTTCCATTAGAAGTTT
CGGTGATAAAGATTCTATGGCAAAAATTGAAAAGAAAATTAGAGAAGTTATTGATATGGG
TATCACTCCTTTATTAGCTATTACTTTTGTTGATGCTCTTTCTAAAAATCAATTTCAAGA
ACTCATTAGAACCAGAGGTGAATTATCAGTTCAAGAATCTAATACCTTTATCATCAATAA
CTATACTGAAAAGGAAACTCATAGAGATATCTCTAAAGATATTCAATATCTTAGATTATT
AACAAAAGCTGTTCAATTATGTAAAATTTTAAAAGAAAAGCAAGCAATGAATAAATTAAA
AGCTTTATCAATTGATGAAAATAATAATCCAACACCTGTTAAAAATCAACAACCATCATC
ATTTTTTGGTGAATGTTCTTCAACCTTCACTTCTCCAAATAAATCGTTTCAAAGTCCAAT
GACTGGATCTCCAATGCAAACTCGTCA----------TCCTCNTCTNNTAAACCCTCTGA
ACAACCCGATTCCATTAAATTAGTATTAAAGAAGAAATTAAGATTATAAAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATCTCTATTATTTATTTTTTTAAAT
AGTTAATAAATTTAGTGTAATTTTCAAA
Length of connected seq. 858
Full length Seq ID -
Full length Seq. -
Length of full length seq. -