>SSI428 (SSI428Q) /CSM/SS/SSI4-B/SSI428Q.Seq.d/
XXXXXXXXXXACTCGTCGGTGGTATCAAACCAAATGCCAACTATACCTTAATGAAATCTT
TCACTGATTTAGGTGCTGGTTTAACTGTCGGTCTCTGTGGTCTTGCTGCTGGTATGGCTA
TTGGTATTGTTGGTGACTCTGGTGTTAGAGCTTTCGGTCAACAACCAAAATTATACGTTA
TTATGATGCTTATCCTTATTTTCTCTGAAGCTCTTGGTTTATATGGTTTAATTATTGGTA
TTTTATTATCATCTGTCTCAGATACCTATTGCCCAGGTCAAGCTTTAGTTCCATTAAACA
GTGGTAACGTTATTGGTAAAAACTAAATAGCTTTATAAAAAAACAATAAATAATATTAAA
ATAAATAAATAAAAATAAACAAAAAAAAAATTTCTAAATAAAAA

---LVGGIKPNANYTLMKSFTDLGAGLTVGLCGLAAGMAIGIVGDSGVRAFGQQPKLYVI
MMLILIFSEALGLYGLIIGILLSSVSDTYCPGQALVPLNSGNVIGKN*ial*knnk*y*n
k*ikinkkkisk*k

Frame A:
---LVGGIKPNANYTLMKSFTDLGAGLTVGLCGLAAGMAIGIVGDSGVRAFGQQPKLYVI
MMLILIFSEALGLYGLIIGILLSSVSDTYCPGQALVPLNSGNVIGKN*ial*knnk*y*n
k*ikinkkkisk*k


Frame B:
---ssvvsnqmptip**nlsli*vlv*lsvsvvlllvwllvllvtlvlelsvnnqnytll
*clslfslkllvymv*llvfyyhlsqipiaqvkl*fh*tvvtllvktk*lykktinniki
nk*k*tkkkflnk


Frame C:
---rrwyqtkcqlylneifh*frcwfncrslwsccwygywycw*lwc*sfrsttkiiryy
daypyfl*sswfiwfnywyfiiiclryllprssfssikqw*ryw*klnsfikkq*iilk*
inknkqkknf*ik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI428 (SSI428Q) /CSM/SS/SSI4-B/SSI428Q.Seq.d/                        642   0.0
VSB705 (VSB705Q) /CSM/VS/VSB7-A/VSB705Q.Seq.d/                        640   0.0
SSM619 (SSM619Q) /CSM/SS/SSM6-A/SSM619Q.Seq.d/                        640   0.0
SSL119 (SSL119Q) /CSM/SS/SSL1-A/SSL119Q.Seq.d/                        640   0.0
SSK860 (SSK860Q) /CSM/SS/SSK8-C/SSK860Q.Seq.d/                        640   0.0
SSK830 (SSK830Q) /CSM/SS/SSK8-B/SSK830Q.Seq.d/                        640   0.0
SSK788 (SSK788Q) /CSM/SS/SSK7-D/SSK788Q.Seq.d/                        640   0.0
SSK647 (SSK647Q) /CSM/SS/SSK6-B/SSK647Q.Seq.d/                        640   0.0
SSK253 (SSK253Q) /CSM/SS/SSK2-C/SSK253Q.Seq.d/                        640   0.0
SSJ703 (SSJ703Q) /CSM/SS/SSJ7-A/SSJ703Q.Seq.d/                        640   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X90516|X90516.1 D.discoideum mRNA for vacuolar proton ATPase subunit.   640  e-180  1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   640  e-180  1
CF081691|CF081691.1 QHL14B02.yg.ab1 QH_L sunflower H.paradoxus (salt stress) Helianthus paradoxus cDNA clone QHL14B02, mRNA sequence.    76  3e-14  2
BM161131|BM161131.1 EST563654 PyBS Plasmodium yoelii yoelii cDNA clone PYCKA95 5' end, mRNA sequence.    62  4e-12  2
BM164005|BM164005.1 EST566528 PyBS Plasmodium yoelii yoelii cDNA clone PYCLO53 5' end, mRNA sequence.    62  5e-12  2
BM160502|BM160502.1 EST563025 PyBS Plasmodium yoelii yoelii cDNA clone PYCJS15 5' end, mRNA sequence.    62  6e-12  2
BM170781|BM170781.1 EST573304 PyBS Plasmodium yoelii yoelii cDNA clone PYCQL13 5' end, mRNA sequence.    62  7e-12  2
BM168520|BM168520.1 EST571043 PyBS Plasmodium yoelii yoelii cDNA clone PYCPB82 5' end, mRNA sequence.    62  7e-12  2
BE131075|BE131075.1 L48-1025T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L48-1025 5', mRNA sequence.    78  8e-12  2
BM165817|BM165817.1 EST568340 PyBS Plasmodium yoelii yoelii cDNA clone PYCMT56 5' end, mRNA sequence.    62  8e-12  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54642) RecName: Full=V-type proton ATPase proteolipid subunit;...   179   3e-44
(Q24808) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...    84   2e-15
(Q24810) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...    84   2e-15
AY343324_1(AY343324|pid:none) Apis mellifera vacuolar H+ ATP syn...    83   3e-15
DQ443153_1(DQ443153|pid:none) Bombyx mori vacuolar H+ ATP syntha...    82   6e-15
(P55277) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...    82   6e-15
EU930293_1(EU930293|pid:none) Simulium vittatum clone SV-524 vac...    82   8e-15
(Q17046) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...    81   1e-14
EZ048856_1(EZ048856|pid:none) TSA: Stomoxys calcitrans SC-4-3-3 ...    81   1e-14
(P31403) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...    81   1e-14

 psg: 0.74  gvh: 0.60  alm: 0.24  top: 0.53  tms: 0.13  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI428 is end

>SSI428Z.Seq
----------ACTCGTCGGTGGTATCAAACCAAATGCCAACTATACCTTAATGAAATCTT
TCACTGATTTAGGTGCTGGTTTAACTGTCGGTCTCTGTGGTCTTGCTGCTGGTATGGCTA
TTGGTATTGTTGGTGACTCTGGTGTTAGAGCTTTCGGTCAACAACCAAAATTATACGTTA
TTATGATGCTTATCCTTATTTTCTCTGAAGCTCTTGGTTTATATGGTTTAATTATTGGTA
TTTTATTATCATCTGTCTCAGATACCTATTGCCCAGGTCAAGCTTTAGTTCCATTAAACA
GTGGTAACGTTATTGGTAAAAACTAAATAGCTTTATAAAAAAACAATAAATAATATTAAA
ATAAATAAATAAAAATAAACAAAAAAAAAATTTCTAAATAAAAA