SSI426
Library SS
(Link to library)
Clone ID SSI426
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16544-1
Original site URL
Representative seq. ID SSI426Z
(Link to Original site)
Representative DNA sequence
>SSI426 (SSI426Q) /CSM/SS/SSI4-B/SSI426Q.Seq.d/
XXXXXXXXXXGAATCCATCATTCGAATGTGTTTAAGAAGATCGTTTTGTGGGAAGATATC
GTTCAAAACCGGTATCCTCTTTGCAATTATAAACCTCGTCTTTATTCTCATCTCTTTCTG
TAACTATAGCTTAATTTCACTCTTTGGTTATACAGCTTTCACTGTAACTATCACCTCTAT
ACTTTTCCATTTAATCTCTTTAATTTTATCAAAATATGTTCAAGGTGTATCTTTAAATAA
TCAATTCACTGATCAATTAAAAACTCTCAGTTTCCATATTCATGATGCTGTCATTGAAAA
ACAAGTTAATAATGTTGCTGAATTAATCAACACTGTTTTAAGTATTGCAAAGGACGTATT
TGGTTGCAAGAGTGTTTATCTCTCTGCTCAATTTGCCATCGTTTTTTATTTAATCGGTTG
TTTAAGCAAATGTTTATCAAATACTGCCATCCTCTACTTTGGTTTCCTCGTTTCCTTTGT
TGTTCCAAGACTCTACGTTGAAAAGAAAGAAGTTATTGACCAACAATTCTCTAAAGTATG
TGCTCTTGCCAAAGAACCACTTTCAAAACTCCACTCTCTCATTCCACAATCTCAAACTAC
CTCAACTAAAAAATCAAACTAAATTAAATAAATAATAACAATAATAATAACATATAATAA
TTGTCATTGGAAA
sequence update 1998. 1. 6
Translated Amino Acid sequence
---SIIRMCLRRSFCGKISFKTGILFAIINLVFILISFCNYSLISLFGYTAFTVTITSIL
FHLISLILSKYVQGVSLNNQFTDQLKTLSFHIHDAVIEKQVNNVAELINTVLSIAKDVFG
CKSVYLSAQFAIVFYLIGCLSKCLSNTAILYFGFLVSFVVPRLYVEKKEVIDQQFSKVCA
LAKEPLSKLHSLIPQSQTTSTKKSN*ik*iitiiitynnchwk


Translated Amino Acid sequence (All Frames)
Frame A:
---npsfecv*edrfvgryrskpvsslql*tsslfsslsvtia*fhslviqlsl*lsply
fsi*sl*fyqnmfkvyl*iinslin*klsvsifmmlslknklimlln*stlf*vlqrtyl
varvfisllnlpsffi*svv*anvyqilpsstlvssfpllfqdstlkrkklltnnslkyv
llpknhfqnstlsfhnlklpqlknqtklnk**q***hiiivig


Frame B:
---ihhsnvfkkivlwedivqnryplcnykprlyshlfl*l*lnftlwlysfhcnyhlyt
fpfnlfnfikicsrcifk*sih*siknsqfpys*cch*kts**cc*inqhcfkyckgriw
lqeclslcsichrflfnrlfkqmfikychpllwfprflccsktlr*kersy*ptil*smc
scqrttfktplshstisnyln*kikln*innnnnnni**lsle


Frame C:
---SIIRMCLRRSFCGKISFKTGILFAIINLVFILISFCNYSLISLFGYTAFTVTITSIL
FHLISLILSKYVQGVSLNNQFTDQLKTLSFHIHDAVIEKQVNNVAELINTVLSIAKDVFG
CKSVYLSAQFAIVFYLIGCLSKCLSNTAILYFGFLVSFVVPRLYVEKKEVIDQQFSKVCA
LAKEPLSKLHSLIPQSQTTSTKKSN*ik*iitiiitynnchwk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI426 (SSI426Q) /CSM/SS/SSI4-B/SSI426Q.Seq.d/ 1207 0.0
VHN302 (VHN302Q) /CSM/VH/VHN3-A/VHN302Q.Seq.d/ 1176 0.0
VFK143 (VFK143Q) /CSM/VF/VFK1-B/VFK143Q.Seq.d/ 1176 0.0
VFG843 (VFG843Q) /CSM/VF/VFG8-B/VFG843Q.Seq.d/ 1176 0.0
VFG780 (VFG780Q) /CSM/VF/VFG7-D/VFG780Q.Seq.d/ 1176 0.0
VFF454 (VFF454Q) /CSM/VF/VFF4-C/VFF454Q.Seq.d/ 1176 0.0
SLC352 (SLC352Q) /CSM/SL/SLC3-C/SLC352Q.Seq.d/ 1176 0.0
SFE831 (SFE831Q) /CSM/SF/SFE8-B/SFE831Q.Seq.d/ 1176 0.0
AHD492 (AHD492Q) /CSM/AH/AHD4-D/AHD492Q.Seq.d/ 1176 0.0
AFG189 (AFG189Q) /CSM/AF/AFG1-D/AFG189Q.Seq.d/ 1176 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY164994|AY164994.1 Dictyostelium discoideum RTNLC (RTNLC) mRNA, complete cds. 1098 0.0 3
AY164656|AY164656.1 Dictyostelium discoideum RTNLC (RTNLC) gene, complete cds. 733 0.0 4
AL713868|AL713868.12 Human DNA sequence from clone RP11-488L4 on chromosome 1. 38 0.52 3
AZ584787|AZ584787.1 1M0389K10R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0389K10 R, DNA sequence. 46 0.55 1
AZ507725|AZ507725.1 1M0349D02R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0349D02 R, DNA sequence. 46 0.55 1
AF083085|AF083085.1 Carassius auratus putative odorant receptor (GFB9) mRNA, partial cds. 46 0.55 1
AC108490|AC108490.2 Homo sapiens chromosome 4 clone CTD-2205L8, WORKING DRAFT SEQUENCE, 10 unordered pieces. 40 1.3 2
AC019173|AC019173.4 Homo sapiens BAC clone RP11-185H6 from 4, complete sequence. 40 1.5 2
BZ759902|BZ759902.1 622_2U2_G03_BAC_024 RPCI-86 Male Feline BAC Felis catus genomic, DNA sequence. 34 1.7 2
BF223841|BF223841.1 7q80b07.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE: 3' similar to SW:SMP1_HUMAN O95807 SMALL MEMBRANE PROTEIN 1. ;, mRNA sequence. 44 2.2 1
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF061090_1(EF061090|pid:none) Danio rerio Nogo-C1 mRNA, complete... 45 0.001
AK297492_1(AK297492|pid:none) Homo sapiens cDNA FLJ55108 complet... 44 0.004
AY555039_1(AY555039|pid:none) Danio rerio reticulon 4-l (rtn4) m... 44 0.006
AY555043_1(AY555043|pid:none) Danio rerio reticulon 4-n (rtn4) m... 44 0.006
AY555046_1(AY555046|pid:none) Danio rerio reticulon 5-a1(265/158... 43 0.007
L10334_1(L10334|pid:none) Homo sapiens neuroendocrine-specific p... 43 0.007
AY555049_1(AY555049|pid:none) Danio rerio reticulon 5-a2 (rtn5) ... 43 0.007
BC090486_1(BC090486|pid:none) Danio rerio reticulon 1a, mRNA (cD... 43 0.007
BC163936_1(BC163936|pid:none) Danio rerio reticulon 1a, mRNA (cD... 43 0.007
(Q5IS59) RecName: Full=Reticulon-1; &AY665269_1(AY665269|pid:no... 43 0.007
protein update 2009. 6.13
PSORT

psg: 0.82 gvh: 0.54 alm: 0.18 top: 0.30 tms: 0.27 mit: 0.61 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
28.0 %: plasma membrane
20.0 %: mitochondrial
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: nuclear
4.0 %: peroxisomal

>> prediction for SSI426 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI426Z
3' end seq.
>SSI426Z.Seq
----------GAATCCATCATTCGAATGTGTTTAAGAAGATCGTTTTGTGGGAAGATATC
GTTCAAAACCGGTATCCTCTTTGCAATTATAAACCTCGTCTTTATTCTCATCTCTTTCTG
TAACTATAGCTTAATTTCACTCTTTGGTTATACAGCTTTCACTGTAACTATCACCTCTAT
ACTTTTCCATTTAATCTCTTTAATTTTATCAAAATATGTTCAAGGTGTATCTTTAAATAA
TCAATTCACTGATCAATTAAAAACTCTCAGTTTCCATATTCATGATGCTGTCATTGAAAA
ACAAGTTAATAATGTTGCTGAATTAATCAACACTGTTTTAAGTATTGCAAAGGACGTATT
TGGTTGCAAGAGTGTTTATCTCTCTGCTCAATTTGCCATCGTTTTTTATTTAATCGGTTG
TTTAAGCAAATGTTTATCAAATACTGCCATCCTCTACTTTGGTTTCCTCGTTTCCTTTGT
TGTTCCAAGACTCTACGTTGAAAAGAAAGAAGTTATTGACCAACAATTCTCTAAAGTATG
TGCTCTTGCCAAAGAACCACTTTCAAAACTCCACTCTCTCATTCCACAATCTCAAACTAC
CTCAACTAAAAAATCAAACTAAATTAAATAAATAATAACAATAATAATAACATATAATAA
TTGTCATTGGAAA
Length of 3' end seq. 663
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -