>SSI424 (SSI424Q) /CSM/SS/SSI4-A/SSI424Q.Seq.d/
ATTTTATAATAATAATATTTAAAAAAAAAGAAATGAATAAATTAATTGTTTTTATTTTAT
TGGTTGTCTCATTAGCCTGCGTTTTCGGTGAATTAGAAGGTGTCCAACCTCAAGTTTGTA
AAATGAAAGCAAATGATTGCAACAGAATGCACCAAGCTTATTTATATGCAACCCAAAATG
GTGATTGGAAAGATATGCCAAAAGATGCCCAAGAATTGTTCTTATCAGTTTATAAAAATA
ATTGTTAAATTTGGAATTCCAATTCTTTTATTTTTAAAAAAAAATACAAAAAAATAAAAA
ATAATAATAAAAAGTTAAATTTCATGATATTATAAAAXXXXXXXXXX

FIIIIFKKKEMNKLIVFILLVVSLACVFGELEGVQPQVCKMKANDCNRMHQAYLYATQNG
DWKDMPKDAQELFLSVYKNNC*iwnsnsfifkkkykkiknnnkklnfmil*---

Frame A:
il***ylkkkk*in*lflfywlsh*pafsvn*kvsnlkfvk*kqmiatectkliymqpkm
vigkicqkmpkncsyqfikiivkfgipillflkkntkk*kiiiks*is*yyk---


Frame B:
fynnni*kkrne*incfyfigclislrfr*irrcptssl*nesk*lqqnapslficnpkw
*leryakrcprivlisl*k*llnlefqffyf*kkiqknkk***kvkfhdii---


Frame C:
FIIIIFKKKEMNKLIVFILLVVSLACVFGELEGVQPQVCKMKANDCNRMHQAYLYATQNG
DWKDMPKDAQELFLSVYKNNC*iwnsnsfifkkkykkiknnnkklnfmil*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI424 (SSI424Q) /CSM/SS/SSI4-A/SSI424Q.Seq.d/                        492   e-138
SSM801 (SSM801Q) /CSM/SS/SSM8-A/SSM801Q.Seq.d/                        488   e-137
SHJ535 (SHJ535Q) /CSM/SH/SHJ5-B/SHJ535Q.Seq.d/                        488   e-137
SSH228 (SSH228Q) /CSM/SS/SSH2-B/SSH228Q.Seq.d/                         40   0.021
VHO528 (VHO528Q) /CSM/VH/VHO5-B/VHO528Q.Seq.d/                         38   0.084
VHI545 (VHI545Q) /CSM/VH/VHI5-B/VHI545Q.Seq.d/                         38   0.084
VHG827 (VHG827Q) /CSM/VH/VHG8-B/VHG827Q.Seq.d/                         38   0.084
VHG503 (VHG503Q) /CSM/VH/VHG5-A/VHG503Q.Seq.d/                         38   0.084
VFL246 (VFL246Q) /CSM/VF/VFL2-B/VFL246Q.Seq.d/                         38   0.084
VFF452 (VFF452Q) /CSM/VF/VFF4-C/VFF452Q.Seq.d/                         38   0.084

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    40  0.001  7
AC010640|AC010640.6 Homo sapiens chromosome 5 clone CTD-2374J20, WORKING DRAFT SEQUENCE, 14 ordered pieces.    50  0.005  3
AC008517|AC008517.7 Homo sapiens chromosome 5 clone CTC-458G6, complete sequence.    50  0.005  3
AC091936|AC091936.2 Homo sapiens chromosome 5 clone RP11-325C20, complete sequence.    36  0.008  4
U64847|U64847.1 Caenorhabditis elegans cosmid F08F3.    40  0.010  4
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34  0.036  6
AC139192|AC139192.1 Pan troglodytes BAC clone RPCI43-44N16 from 7, complete sequence.    40  0.037  5
AX345690|AX345690.1 Sequence 761 from Patent WO0200928.           44  0.084  3
BX234758|BX234758.1 Danio rerio genomic clone DKEY-245A13, genomic survey sequence.    34  0.086  3
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence.    36  0.095  4

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 429,432,228

 psg: 0.81  gvh: 0.82  alm: 0.18  top: 0.27  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal
	  4.0 %: extracellular, including cell wall

>> prediction for SSI424 is end

>SSI424F.Seq
ATTTTATAATAATAATATTTAAAAAAAAAGAAATGAATAAATTAATTGTTTTTATTTTAT
TGGTTGTCTCATTAGCCTGCGTTTTCGGTGAATTAGAAGGTGTCCAACCTCAAGTTTGTA
AAATGAAAGCAAATGATTGCAACAGAATGCACCAAGCTTATTTATATGCAACCCAAAATG
GTGATTGGAAAGATATGCCAAAAGATGCCCAAGAATTGTTCTTATCAGTTTATAAAAATA
ATTGTTAAATTTGGAATTCCAATTCTTTTATTTTTAAAAAAAAATACAAAAAAATAAAAA
ATAATAATAAAAAGTTAAATTTCATGATATTATAAAA----------