SSI421
Library SS
(Link to library)
Clone ID SSI421
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13881-1
Original site URL
Representative seq. ID SSI421P
(Link to Original site)
Representative DNA sequence
>SSI421 (SSI421Q) /CSM/SS/SSI4-A/SSI421Q.Seq.d/
CACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATCCGACAACAACAATA
ACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAATAATGAATCCAGA
TTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTTCAGATTT
TTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAACTGGTAGTTC
ACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTTATTATTAAC
AAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGAATTAGAGTT
TGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTGAACAACA
ACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACATAG
TGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAGCAGGTTA
TAGTGTTGGACAAGACGCTGXXXXXXXXXXGCCGAAGAAAATAGTACAGTTTCACCAATC
GTAAATAAAGTTTCAAGTTTTGGTACTTTTATTTAACAAGAAGTTCAACAAATTCAAACT
GAAACCTCTCAAGCAATTGATGAAAAAAATTAAGAAAAAGGTATTAACTCTTCAAATGAT
ACTGGATTACAACAACAACAACAACAACAACAACAACAACCAGGACAACCAGAACCACAC
TCCAATATAGATTTTTCAAAAGAACAATAAGTTNATTATTTTTATGAAAAAAAAAAAAAA
AAAAAAAAAAAATACTCAAAAATGTAAATCTATATAATCATCTCTTTTAAAAGTTTAGTT
TAATTTATAAATAGTATACCTCTTTTATTTTTTCAATATATTTAAAAAGTAAAATAAAAA
AAATAAAAATAAAGAAACAATTGTA
sequence update 1998.11.10
Translated Amino Acid sequence
thlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTKTVSDF
FSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFTPELEF
DLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDNERSKTSVVASIIAAGY
SVGQDA---

---AEENSTVSPIVNKVSSFGTFI*qevqqiqtetsqaidekn*ekginssndtglqqqq
qqqqqqpgqpephsnidfskeq*vxyfyekkkkkkkkyskm*iyiiisfkslv*finsip
llffqyi*kvk*kk*k*rnnc


Translated Amino Acid sequence (All Frames)
Frame A:
htltqyiyyfklylnptttititttthsliyi*i*nnesrfhslcfkyfiesky*nsfrf
flilwknc*fifkk*pnw*fttsnssi*irfscknsfiinkcincr*snsscsiytrirv
*fnttifsttti**sqw*tttttttic*sttrrhck*rt*car**kk*nlcccinycsrl
*cwtrr---

---AEENSTVSPIVNKVSSFGTFI*qevqqiqtetsqaidekn*ekginssndtglqqqq
qqqqqqpgqpephsnidfskeq*vxyfyekkkkkkkkyskm*iyiiisfkslv*finsip
llffqyi*kvk*kk*k*rnnc

Frame B:
thlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTKTVSDF
FSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFTPELEF
DLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDNERSKTSVVASIIAAGY
SVGQDA---

---pkkivqfhqs*ikfqvlvllfnkkfnkfklkplkqlmkkikkkvltlqmildynnnn
nnnnnnqdnqnhtpi*ifqknnkxiifmkkkkkkkkntqkcksi*ssllkv*fnl*ivyl
fyffnifkk*nkknknketiv

Frame C:
htytiyllf*iisksdnnnnnnnnnpffnihinik**iqisqfmfqifh*kqilkqfqif
shfveelliyf*emtqlvvhnkq**ylnqiqlqkqlyy*qmh*l*ik*fklfnlhqn*sl
i*hnnflnnnnliisvvnnnhnnnnmlvnhkktl*ienivcqimkevkplllhqllqqvi
vldktl---

---rrk*ysftnrk*sfkfwyfyltrsstnsn*nlssn**kklrkry*lfk*ywittttt
ttttttrttrttlqyrffkrtisxlfl*kkkkkkkkilknvnlynhlf*kfsliyk*yts
fifsiylkskikkikikkql

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO778 (VFO778Q) /CSM/VF/VFO7-D/VFO778Q.Seq.d/ 666 0.0
VFO676 (VFO676Q) /CSM/VF/VFO6-D/VFO676Q.Seq.d/ 666 0.0
VFO336 (VFO336Q) /CSM/VF/VFO3-B/VFO336Q.Seq.d/ 666 0.0
VFL607 (VFL607Q) /CSM/VF/VFL6-A/VFL607Q.Seq.d/ 666 0.0
VFJ755 (VFJ755Q) /CSM/VF/VFJ7-C/VFJ755Q.Seq.d/ 666 0.0
VFI288 (VFI288Q) /CSM/VF/VFI2-D/VFI288Q.Seq.d/ 666 0.0
VFG496 (VFG496Q) /CSM/VF/VFG4-D/VFG496Q.Seq.d/ 666 0.0
VFG273 (VFG273Q) /CSM/VF/VFG2-D/VFG273Q.Seq.d/ 666 0.0
VFE514 (VFE514Q) /CSM/VF/VFE5-A/VFE514Q.Seq.d/ 666 0.0
VFE152 (VFE152Q) /CSM/VF/VFE1-C/VFE152Q.Seq.d/ 666 0.0

own update 2001.12. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5. 34 0.003 9
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence. 46 0.005 9
BI509158|BI509158.1 BB170002B10C07.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170002B10C07 5', mRNA sequence. 42 0.012 2
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 40 0.020 9
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 38 0.052 8
AC013329|AC013329.3 Homo sapiens chromosome 2 clone RP11-422B1 map 2, WORKING DRAFT SEQUENCE, 8 unordered pieces. 42 0.083 6
AC007976|AC007976.4 Drosophila melanogaster, chromosome 2L, region 22C-22D, BAC clone BACR01K07, complete sequence. 40 0.085 3
AC096884|AC096884.2 Sus scrofa clone RP44-519O7, complete sequence. 36 0.10 5
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence. 34 0.12 9
AP000470|AP000470.2 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B15H23, LL56-APP region. 38 0.12 7
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR954203_362(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 44 0.006
AP007171_537(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 42 0.024
AM920437_2007(AM920437|pid:none) Penicillium chrysogenum Wiscons... 42 0.024
CR855144_15(CR855144|pid:none) Oryza sativa (indica cultivar-gro... 41 0.054
EU958085_1(EU958085|pid:none) Zea mays clone 1672545 RNA-binding... 41 0.071
AC091811_13(AC091811|pid:none) Oryza sativa chromosome 3 BAC OSJ... 40 0.16
BT068289_1(BT068289|pid:none) Zea mays full-length cDNA clone ZM... 39 0.21
BT061154_1(BT061154|pid:none) Zea mays full-length cDNA clone ZM... 39 0.21
AC090882_24(AC090882|pid:none) Oryza sativa chromosome 3 BAC OSJ... 39 0.27
EF086656_1(EF086656|pid:none) Picea sitchensis clone WS02730_G11... 38 0.46
protein update 2009. 6.13
PSORT

psg: 0.84 gvh: 0.45 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
20.0 %: mitochondrial
20.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system

>> prediction for SSI421 is cyt

5' end seq. ID SSI421F
5' end seq.
>SSI421F.Seq
CACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATCCGACAACAACAATA
ACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAATAATGAATCCAGA
TTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTTCAGATTT
TTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAACTGGTAGTTC
ACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTTATTATTAAC
AAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGAATTAGAGTT
TGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTGAACAACA
ACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACATAG
TGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAGCAGGTTA
TAGTGTTGGACAAGACGCTG----------
Length of 5' end seq. 560
3' end seq. ID SSI421Z
3' end seq.
>SSI421Z.Seq
----------GCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAAGTTTCAAGTTT
TGGTACTTTTATTTAACAAGAAGTTCAACAAATTCAAACTGAAACCTCTCAAGCAATTGA
TGAAAAAAATTAAGAAAAAGGTATTAACTCTTCAAATGATACTGGATTACAACAACAACA
ACAACAACAACAACAACAACCAGGACAACCAGAACCACACTCCAATATAGATTTTTCAAA
AGAACAATAAGTTNATTATTTTTATGAAAAAAAAAAAAAAAAAAAAAAAAAATACTCAAA
AATGTAAATCTATATAATCATCTCTTTTAAAAGTTTAGTTTAATTTATAAATAGTATACC
TCTTTTATTTTTTCAATATATTTAAAAAGTAAAATAAAAAAAATAAAAATAAAGAAACAA
TTGTA
Length of 3' end seq. 415
Connected seq. ID SSI421P
Connected seq.
>SSI421P.Seq
CACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATCCGACAACAACAATA
ACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAATAATGAATCCAGA
TTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTTCAGATTT
TTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAACTGGTAGTTC
ACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTTATTATTAAC
AAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGAATTAGAGTT
TGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTGAACAACA
ACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACATAG
TGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAGCAGGTTA
TAGTGTTGGACAAGACGCTG----------GCCGAAGAAAATAGTACAGTTTCACCAATC
GTAAATAAAGTTTCAAGTTTTGGTACTTTTATTTAACAAGAAGTTCAACAAATTCAAACT
GAAACCTCTCAAGCAATTGATGAAAAAAATTAAGAAAAAGGTATTAACTCTTCAAATGAT
ACTGGATTACAACAACAACAACAACAACAACAACAACAACCAGGACAACCAGAACCACAC
TCCAATATAGATTTTTCAAAAGAACAATAAGTTNATTATTTTTATGAAAAAAAAAAAAAA
AAAAAAAAAAAATACTCAAAAATGTAAATCTATATAATCATCTCTTTTAAAAGTTTAGTT
TAATTTATAAATAGTATACCTCTTTTATTTTTTCAATATATTTAAAAAGTAAAATAAAAA
AAATAAAAATAAAGAAACAATTGTA
Length of connected seq. 975
Full length Seq ID -
Full length Seq. -
Length of full length seq. -