SSI418 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SSI418
Library	SS (Link to library)
Clone ID	SSI418 (Link to dictyBase)
Atlas ID	-
NBRP ID	G21057
dictyBase ID	DDB0218641
Link to Contig	Contig-U05448-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SS/SSI4-A/SSI418Q.Seq.d/
Representative seq. ID	SSI418E (Link to Original site)
Representative DNA sequence	>SSI418 (SSI418Q) /CSM/SS/SSI4-A/SSI418Q.Seq.d/ AATTCATCTAAACCGCCATTAAGAGATAGAAATAATAATCATACATTAAATACTACTCAG TCTGTAAATGAAACAATAACAACATCATCATCGTCATCGTCATCATCATCACCAGCATCA TCACCATCATTATTACTATCATCATCTACAAATATAAATACACCAATTGAATTAGATGTA ATTAAAAAAGAAGAAAAGAAAGAAAAGAAAGGAGAAAAAGAAGAAAAAGAAGAAAAAGAA GAAAAAGAAGATGATATTATTAAAAAGAATGAAACAGAAGAAGAGAGTATTACAGATGAG ATTTTATCAGATTCAAATATTTCAACACCAATTGGTAGTAATGTAAATGATGATATTGAA CGTGGTTGTTTATTCAATTCGAATGAAGAGAAAATTATTGATCCAAATGAAAATGAAGGC TCTGATAATTTTACAATTGATGAATTGGTTGAAAATATTTCTGAAGTTTCAGATTTCCAC ACTGATGAATCTTCATCAGTTTCTTTAAAGAGTGGTTCCAATTGTAATCAAAAATCAAAG AAAAAGAGAAATCAAAACAAAATAAATCATCGTCATCATCAAATAATATAAATACAAATA GTAGTGGTAAAGTTTTATCATCACCATCATCCTCTTCCAAAGTTAATTCAAAACCATCAA CAAATGTTAGAAAGAATTCAAAAGTTAATAGTAAAAATCAAAGTCATACAAAAGGTAAAT TCTTATCTTATGAAAATGATAATTCACTTGGTGATAAAAATTCCAGCTTTTTCAATTCAC CAACATTTAAATTCTGTAAAGAACATTTTGTTGTTATCATAATGATTTTTGCTATCGTTT CAATAACAGTTATATTACAAAAATAAAAATAATAATAATAATAATAATAATAATAATAAT AATAATAATAATAATAATAATAATAATAATAATAATTAGAGAGCCCAACTACTATAATAC ATAATTAAAAAATA
sequence update	1999. 4.21
Translated Amino Acid sequence	NSSKPPLRDRNNNHTLNTTQSVNETITTSSSSSSSSSPASSPSLLLSSSTNINTPIELDV IKKEEKKEKKGEKEEKEEKEEKEDDIIKKNETEEESITDEILSDSNISTPIGSNVNDDIE RGCLFNSNEEKIIDPNENEGSDNFTIDELVENISEVSDFHTDESSSVSLKSGSNCNQKSK KKRNQNKINHRHHQIIiqivvvkfyhhhhplpkliqnhqqmleriqklivkikviqkvn sylmkmiihlvikipafsihqhlnsvknilllsfllsfqqlyyknknnnnnnnnnnn nnnnnnnnnnnnraqllyiikk
Translated Amino Acid sequence (All Frames)	Frame A: NSSKPPLRDRNNNHTLNTTQSVNETITTSSSSSSSSSPASSPSLLLSSSTNINTPIELDV IKKEEKKEKKGEKEEKEEKEEKEDDIIKKNETEEESITDEILSDSNISTPIGSNVNDDIE RGCLFNSNEEKIIDPNENEGSDNFTIDELVENISEVSDFHTDESSSVSLKSGSNCNQKSK KKRNQNKINHRHHQIIiqivvvkfyhhhhplpkliqnhqqmleriqklivkikviqkvn sylmkmiihlvikipafsihqhlnsvknilllsfllsfqqlyyknknnnnnnnnnnn nnnnnnnnnnnnraqllyiikk Frame B: ihlnrheieiiiihillslmkqqhhhrhrhhhhqhhhhhyyyhhlqiihqlnm* lkkkkrkkrkekkkkkkkkkkkkmillkrmkqkkrvlqmrfyqiqifqhqlvvmmmiln vvvysirmkrklliqmkmkaliilqlmnwlkiflkfqistlmnlhqflrvvpiviknqr kreiktkiiviikykyk*wsfiitiilfqsfktinkckefks**ksksykri lilkftwkfqlfqftniilrtfccyhndfcyrfnnsyitkikiiiiiiiiiii iiiiiiiiiiiirepnyyntlkn Frame C: fitaikrk*syikyysvcknnnniiiviviiitsiitiiitiiiykykytnircn krrkerkerrkrrkrrkrrkrryykenrrreyyrdfirfkyfntnwckyt wlfiqferenyskkrlfynigkyfsfrfphifisffkewfqlskike kekskqnksssssnnintnssgkvlsspsssskvnskpstnvrknskvnsknqshtkgkf lsyendnslgdknssffnsptfkfckehfvviimifaivsitvilqkk******** ********lespttiihnki
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSI418 (SSI418Q) /CSM/SS/SSI4-A/SSI418Q.Seq.d/ 517 e-146 SLB112 (SLB112Q) /CSM/SL/SLB1-A/SLB112Q.Seq.d/ 42 0.016 SLA328 (SLA328Q) /CSM/SL/SLA3-B/SLA328Q.Seq.d/ 42 0.016 VFN858 (VFN858Q) /CSM/VF/VFN8-C/VFN858Q.Seq.d/ 36 0.97 VFN578 (VFN578Q) /CSM/VF/VFN5-D/VFN578Q.Seq.d/ 36 0.97 VFM318 (VFM318Q) /CSM/VF/VFM3-A/VFM318Q.Seq.d/ 36 0.97 VFH895 (VFH895Q) /CSM/VF/VFH8-D/VFH895Q.Seq.d/ 36 0.97 SSF632 (SSF632Q) /CSM/SS/SSF6-B/SSF632Q.Seq.d/ 36 0.97 SSD831 (SSD831Q) /CSM/SS/SSD8-B/SSD831Q.Seq.d/ 36 0.97 SLA886 (SLA886Q) /CSM/SL/SLA8-D/SLA886Q.Seq.d/ 36 0.97
own update	2003.10.30
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BH760013\|BH760013.1 Mt_H2M02_021D18_f MtH2 Medicago truncatula BAC library Medicago truncatula genomic clone Mt_H2M02_021D18, DNA sequence. 52 0.013 1 AC119062\|AC119062.2 Pan troglodytes clone RP43-160A21, WORKING DRAFT SEQUENCE, 3 ordered pieces. 44 0.019 6 AC116977\|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 34 0.051 11 AC012589\|AC012589.5 Homo sapiens chromosome 11 clone RP11-119P10 map 11, WORKING DRAFT SEQUENCE, 23 unordered pieces. 40 0.065 2 AE017149\|AE017149.1 Helicobacter hepaticus ATCC 51449 section 6 of 6 of the complete genome. 40 0.066 5 AC137603\|AC137603.16 Medicago truncatula clone mth2-14b10, complete sequence. 52 0.13 3 AL049803\|AL049803.1 Arabidopsis thaliana DNA * SEQUENCING IN PROGRESS * BAC clone F26K10 (ESSAII project). 42 0.39 3 AC097013\|AC097013.7 Schistosoma mansoni chromosome 0 clone Sm1-48C10, * SEQUENCING IN PROGRESS *, 5 unordered pieces. 34 0.53 6 AL844506\|AL844506.1 Plasmodium falciparum chromosome 7. 40 0.60 12 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 0.70 10
dna update	2003. 7.29
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AB025628_10(AB025628\|pid:none) Arabidopsis thaliana genomic DNA,... 37 1.3 CP001185_1676(CP001185\|pid:none) Thermosipho africanus TCF52B, c... 35 3.9 CP000950_189(CP000950\|pid:none) Yersinia pseudotuberculosis YPII... 34 8.7
protein update	2009. 3. 6
PSORT	psg: 0.76 gvh: 0.49 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.03 nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: mitochondrial 36.0 %: nuclear 16.0 %: cytoplasmic 8.0 %: cytoskeletal >> prediction for SSI418 is mit
5' end seq. ID	SSI418F
5' end seq.	>SSI418F.Seq AATTCATCTAAACCGCCATTAAGAGATAGAAATAATAATCATACATTAAATACTACTCAG TCTGTAAATGAAACAATAACAACATCATCATCGTCATCGTCATCATCATCACCAGCATCA TCACCATCATTATTACTATCATCATCTACAAATATAAATACACCAATTGAATTAGATGTA ATTAAAAAAGAAGAAAAGAAAGAAAAGAAAGGAGAAAAAGAAGAAAAAGAAGAAAAAGAA GAAAAAGAAGATGATATTATTAAAAAGAATGAAACAGAAGAAGAGAGTATTACAGATGAG ATTTTATCAGATTCAAATATTTCAACACCAATTGGTAGTAATGTAAATGATGATATTGAA CGTGGTTGTTTATTCAATTCGAATGAAGAGAAAATTATTGATTCATCACCAAATGAAAAT GAAGGCTCTGATAATTTTACAATTGATGAATTGGTTGAAAATATTTCTGAAGTTTCAGAT TTCCACACTGATGAATCTTCATCAGTTTCTTTAAAGAGTGGTTCCAATTGTAATCAAAAA TCAAAGAAAAAG----------
Length of 5' end seq.	552
3' end seq. ID	SSI418Z
3' end seq.	>SSI418Z.Seq ----------CCAAATGAAAATGAAGGCTCTGATAATTTTACAATTGATGAATTGGTTGA AAATATTTCTGAAGTTTCAGATTTCCACACTGATGAATCTTCATCAGTTTCTTTAAAGAG TGGTTCCAATTGTAATCAAAAATCAAAGAAAAAGAAATCAAAACAAAATAAATCATCGTC ATCATCAAATAATATAAATACAAATAGTAGTGGTAAAGTTTTATCATCACCATCATCCTC TTCCAAAGTTAATTCAAAACCATCAACAAATGTTAGAAAGAATTCAAAAGTTAATAGTAA AAATCAAAGTCATACAAAAGGTAAATTCTTATCTTATGAAAATGATAATTCACTTGGTGA TAAAAATTCCAGCTTTTTCAATTCACCAACATTTAAATTCTGTAAAGAACATTTTGTTGT TATCATAATGATTTTTGCTATCGTTTCAATAACAGTTATATTACAAAAATAAAAATAATA ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA ATTAGAGAGCCCAACTACTATAATACATAATTAAAAAATAGAAAAAGAA
Length of 3' end seq.	579
Connected seq. ID	SSI418P
Connected seq.	>SSI418P.Seq AATTCATCTAAACCGCCATTAAGAGATAGAAATAATAATCATACATTAAATACTACTCAG TCTGTAAATGAAACAATAACAACATCATCATCGTCATCGTCATCATCATCACCAGCATCA TCACCATCATTATTACTATCATCATCTACAAATATAAATACACCAATTGAATTAGATGTA ATTAAAAAAGAAGAAAAGAAAGAAAAGAAAGGAGAAAAAGAAGAAAAAGAAGAAAAAGAA GAAAAAGAAGATGATATTATTAAAAAGAATGAAACAGAAGAAGAGAGTATTACAGATGAG ATTTTATCAGATTCAAATATTTCAACACCAATTGGTAGTAATGTAAATGATGATATTGAA CGTGGTTGTTTATTCAATTCGAATGAAGAGAAAATTATTGATTCATCACCAAATGAAAAT GAAGGCTCTGATAATTTTACAATTGATGAATTGGTTGAAAATATTTCTGAAGTTTCAGAT TTCCACACTGATGAATCTTCATCAGTTTCTTTAAAGAGTGGTTCCAATTGTAATCAAAAA TCAAAGAAAAAG----------CCAAATGAAAATGAAGGCTCTGATAATTTTACAATTGA TGAATTGGTTGAAAATATTTCTGAAGTTTCAGATTTCCACACTGATGAATCTTCATCAGT TTCTTTAAAGAGTGGTTCCAATTGTAATCAAAAATCAAAGAAAAAGAAATCAAAACAAAA TAAATCATCGTCATCATCAAATAATATAAATACAAATAGTAGTGGTAAAGTTTTATCATC ACCATCATCCTCTTCCAAAGTTAATTCAAAACCATCAACAAATGTTAGAAAGAATTCAAA AGTTAATAGTAAAAATCAAAGTCATACAAAAGGTAAATTCTTATCTTATGAAAATGATAA TTCACTTGGTGATAAAAATTCCAGCTTTTTCAATTCACCAACATTTAAATTCTGTAAAGA ACATTTTGTTGTTATCATAATGATTTTTGCTATCGTTTCAATAACAGTTATATTACAAAA ATAAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA ATAATAATAATAATTAGAGAGCCCAACTACTATAATACATAATTAAAAAATAGAAAAAGA A
Length of connected seq.	1131
Full length Seq ID	SSI418E
Full length Seq.	>SSI418E.Seq AATTCATCTAAACCGCCATTAAGAGATAGAAATAATAATCATACATTAAATACTACTCAG TCTGTAAATGAAACAATAACAACATCATCATCGTCATCGTCATCATCATCACCAGCATCA TCACCATCATTATTACTATCATCATCTACAAATATAAATACACCAATTGAATTAGATGTA ATTAAAAAAGAAGAAAAGAAAGAAAAGAAAGGAGAAAAAGAAGAAAAAGAAGAAAAAGAA GAAAAAGAAGATGATATTATTAAAAAGAATGAAACAGAAGAAGAGAGTATTACAGATGAG ATTTTATCAGATTCAAATATTTCAACACCAATTGGTAGTAATGTAAATGATGATATTGAA CGTGGTTGTTTATTCAATTCGAATGAAGAGAAAATTATTGATCCAAATGAAAATGAAGGC TCTGATAATTTTACAATTGATGAATTGGTTGAAAATATTTCTGAAGTTTCAGATTTCCAC ACTGATGAATCTTCATCAGTTTCTTTAAAGAGTGGTTCCAATTGTAATCAAAAATCAAAG AAAAAGAGAAATCAAAACAAAATAAATCATCGTCATCATCAAATAATATAAATACAAATA GTAGTGGTAAAGTTTTATCATCACCATCATCCTCTTCCAAAGTTAATTCAAAACCATCAA CAAATGTTAGAAAGAATTCAAAAGTTAATAGTAAAAATCAAAGTCATACAAAAGGTAAAT TCTTATCTTATGAAAATGATAATTCACTTGGTGATAAAAATTCCAGCTTTTTCAATTCAC CAACATTTAAATTCTGTAAAGAACATTTTGTTGTTATCATAATGATTTTTGCTATCGTTT CAATAACAGTTATATTACAAAAATAAAAATAATAATAATAATAATAATAATAATAATAAT AATAATAATAATAATAATAATAATAATAATAATAATTAGAGAGCCCAACTACTATAATAC ATAATTAAAAAATA
Length of full length seq.	974

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas