NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI415
Library SS
(Link to library)
Clone ID SSI415
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16409-1
Original site URL
Representative seq. ID SSI415P
(Link to Original site)
Representative DNA sequence 
>SSI415 (SSI415Q) /CSM/SS/SSI4-A/SSI415Q.Seq.d/
ATTTATATTAATATTTTTATTGTTTTGTTTTTTTTTTTTTATTTTTTATTTTTTATTTTT
TTGCTTACTGGAAATCTTCCAATGAGTTCAATCATCAATATTGGAAAACAAAATTAATAA
TTATATTCAAAAATACTATCATTCCAATTGAATTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAACCTCACAAATAATTAATTGTAATAGTAAATTTTAGTAGTAAACAAAGAAAAAACA
AAAAAAAAAAAATTATAGAAATTTCCTTTTGGAAAGAAAAAAAAAAAAAAAAATTCTTXX
XXXXXXXXAAAACTGGAAAAGAAAAAAAAAATAAAAACAAAAAAAAAAAAAACATAACAT
TAATAATATCAAAAATATTTTTAAAAAATATTTATTCAACACATACAATAAATTTGTATT
ATTAAAAAAAAAAAAATAAAAAAAATAAAAAATACTTAAACAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998.11.10
Translated Amino Acid sequence 
ly*yfycfvffflffifyffaywkssnefnhqywktkliiifkntiipielkkkkkkkkk
kphk*LIVIVNFSSKQRKNKKKKIIEISFWKEKKKKKF---

---KTGKEKKNKNKKKKNITLIISKIFLKNIYSTHTINLYY*kkknkknkkylnkkkkkk
kkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iyinifivlffffyflffiflltgnlpmssiinigkqn**lyskilsfqln*kkkkkkkk
knltnn*l***ilvvnkektkkkkl*kfpfgkkkkkkns---

---KTGKEKKNKNKKKKNITLIISKIFLKNIYSTHTINLYY*kkknkknkkylnkkkkkk
kkkkkkkkkkkk

Frame B:
filifllfcffffifyflffclleifq*vqssilenkinnyiqkyyhsn*ikkkkkkkkk
ktsqiincnskf***tkkkqkkknyrnfllerkkkkkil---

---klekkkkiktkkkkt*h**yqkyf*kifiqhiq*iciikkkkikkiknt*tkkkkkk
kkkkkkkkkkkk

Frame C:
ly*yfycfvffflffifyffaywkssnefnhqywktkliiifkntiipielkkkkkkkkk
kphk*LIVIVNFSSKQRKNKKKKIIEISFWKEKKKKKF---

---nwkrkkk*kqkkkkhninniknifkkylfntynkfvllkkkk*kk*kilkqkkkkkk
kkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM835 (SSM835Q) /CSM/SS/SSM8-B/SSM835Q.Seq.d/                        182   4e-45
SSJ180 (SSJ180Q) /CSM/SS/SSJ1-D/SSJ180Q.Seq.d/                        182   4e-45
SSI415 (SSI415Q) /CSM/SS/SSI4-A/SSI415Q.Seq.d/                        182   4e-45
SHE306 (SHE306Q) /CSM/SH/SHE3-A/SHE306Q.Seq.d/                        182   4e-45
AFL835 (AFL835Q) /CSM/AF/AFL8-B/AFL835Q.Seq.d/                        182   4e-45
VSC793 (VSC793Q) /CSM/VS/VSC7-D/VSC793Q.Seq.d/                        117   2e-25
SSK852 (SSK852Q) /CSM/SS/SSK8-C/SSK852Q.Seq.d/                        117   2e-25
SSJ161 (SSJ161Q) /CSM/SS/SSJ1-C/SSJ161Q.Seq.d/                        117   2e-25
SSD580 (SSD580Q) /CSM/SS/SSD5-D/SSD580Q.Seq.d/                        117   2e-25
SSD579 (SSD579Q) /CSM/SS/SSD5-D/SSD579Q.Seq.d/                        117   2e-25
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF111941|AF111941.1 Dictyostelium discoideum AX4 development protein DG1148 (DG1148) gene, complete cds.   117  2e-47  3
AC093793|AC093793.2 Homo sapiens BAC clone RP11-272O16 from 4, complete sequence.    42  0.004  4
AX344560|AX344560.1 Sequence 11 from Patent WO0200932.            36  0.026  6
AC116737|AC116737.4 Mus musculus clone RP23-373I18, WORKING DRAFT SEQUENCE, 11 unordered pieces.    50  0.027  1
AX346416|AX346416.1 Sequence 1487 from Patent WO0200928.          44  0.028  2
AC027226|AC027226.2 Homo sapiens chromosome 21 clone RP11-709I9 map 21, WORKING DRAFT SEQUENCE, 25 unordered pieces.    40  0.067  2
AX345419|AX345419.1 Sequence 490 from Patent WO0200928.           40  0.071  3
AL356114|AL356114.12 Human DNA sequence from clone RP11-257I14 on chromosome 10.    44  0.094  3
BX145488|BX145488.1 Danio rerio genomic clone DKEY-110B13, genomic survey sequence.    48  0.11  1
AC098872|AC098872.5 Homo sapiens BAC clone RP11-773P9 from 2, complete sequence.    48  0.11  1
dna update 2003. 7.29
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 211,944,345
protein update 2009. 6.13
PSORT 

 psg: 0.08  gvh: 0.15  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.03
 nuc: 0.98  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for SSI415 is nuc
5' end seq. ID SSI415F
5' end seq. 
>SSI415F.Seq
ATTTATATTAATATTTTTATTGTTTTGTTTTTTTTTTTTTATTTTTTATTTTTTATTTTT
TTGCTTACTGGAAATCTTCCAATGAGTTCAATCATCAATATTGGAAAACAAAATTAATAA
TTATATTCAAAAATACTATCATTCCAATTGAATTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAACCTCACAAATAATTAATTGTAATAGTAAATTTTAGTAGTAAACAAAGAAAAAACA
AAAAAAAAAAAATTATAGAAATTTCCTTTTGGAAAGAAAAAAAAAAAAAAAAATTCTT--
--------
Length of 5' end seq. 298
3' end seq. ID SSI415Z
3' end seq. 
>SSI415Z.Seq
----------AAAACTGGAAAAGAAAAAAAAAATAAAAACAAAAAAAAAAAAAACATAAC
ATTAATAATATCAAAAATATTTTTAAAAAATATTTATTCAACACATACAATAAATTTGTA
TTATTAAAAAAAAAAAAATAAAAAAAATAAAAAATACTTAAACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 209
Connected seq. ID SSI415P
Connected seq. 
>SSI415P.Seq
ATTTATATTAATATTTTTATTGTTTTGTTTTTTTTTTTTTATTTTTTATTTTTTATTTTT
TTGCTTACTGGAAATCTTCCAATGAGTTCAATCATCAATATTGGAAAACAAAATTAATAA
TTATATTCAAAAATACTATCATTCCAATTGAATTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAACCTCACAAATAATTAATTGTAATAGTAAATTTTAGTAGTAAACAAAGAAAAAACA
AAAAAAAAAAAATTATAGAAATTTCCTTTTGGAAAGAAAAAAAAAAAAAAAAATTCTT--
--------AAAACTGGAAAAGAAAAAAAAAATAAAAACAAAAAAAAAAAAAACATAACAT
TAATAATATCAAAAATATTTTTAAAAAATATTTATTCAACACATACAATAAATTTGTATT
ATTAAAAAAAAAAAAATAAAAAAAATAAAAAATACTTAAACAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 507
Full length Seq ID -
Full length Seq. -
Length of full length seq. -