>SSI411 (SSI411Q) /CSM/SS/SSI4-A/SSI411Q.Seq.d/
AGAAAAATGCAAACTGTACGTGGTGAACCAGTCATTGAAAATATCAGAGAACATTTAGAT
AAAATACCAACACCAGAGAATAGAAAATATGTGAATGATGCCACTACATATAAATCAACA
CAAACATATCTTAGATTTTATGGTAGCACTGATAAAGGTGAGATAAGATACGAAAAATCA
CCACAATTTCACAGAATTTTAAGAGAAAACGGTTTCTCAATGGATCCAGTTCAAAAAGTT
TCTTTATTTAGACAAGGCAAAGTTAGAGTTGTTGGTCCACATCAAGTTATCCCATTAAAA
GGAGAAAAATTGGATATTCCAAAATATTATTCAAATCAAGAAATTGATTATAAAGCATAT
TTTGAAACCCTCAAACCAACTGAAACTCACTAAATAATGTAAACGAATAAATATTAATAA
TAAAAAATACAAGATATAXXXXXXXXXX

RKMQTVRGEPVIENIREHLDKIPTPENRKYVNDATTYKSTQTYLRFYGSTDKGEIRYEKS
PQFHRILRENGFSMDPVQKVSLFRQGKVRVVGPHQVIPLKGEKLDIPKYYSNQEIDYKAY
FETLKPTETH*im*tnky***kiqd---

Frame A:
RKMQTVRGEPVIENIREHLDKIPTPENRKYVNDATTYKSTQTYLRFYGSTDKGEIRYEKS
PQFHRILRENGFSMDPVQKVSLFRQGKVRVVGPHQVIPLKGEKLDIPKYYSNQEIDYKAY
FETLKPTETH*im*tnky***kiqd---


Frame B:
ekcklyvvnqslkiseni*ikyqhqrienm*mmplhinqhkhildfmvalikvr*dtknh
hnftef*ektvsqwiqfkkflyldkaklellvhiklsh*keknwifqniiqikkliikhi
lkpsnqlkltk*ckrininnkkyki---


Frame C:
knanctw*tsh*kyqrtfr*ntntre*kice*chyi*intnis*ilw*h**r*dkirkit
tisqnfkrkrflngsssksffi*trqs*scwstssypikrrkigyskilfksrn*l*sif
*npqtn*nslnnvne*iliikntry---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI411 (SSI411Q) /CSM/SS/SSI4-A/SSI411Q.Seq.d/                        771   0.0
VSI590 (VSI590Q) /CSM/VS/VSI5-D/VSI590Q.Seq.d/                        759   0.0
VSB849 (VSB849Q) /CSM/VS/VSB8-C/VSB849Q.Seq.d/                        759   0.0
VSJ590 (VSJ590Q) /CSM/VS/VSJ5-D/VSJ590Q.Seq.d/                        757   0.0
VSB744 (VSB744Q) /CSM/VS/VSB7-B/VSB744Q.Seq.d/                        755   0.0
VSG311 (VSG311Q) /CSM/VS/VSG3-A/VSG311Q.Seq.d/                        737   0.0
VHJ407 (VHJ407Q) /CSM/VH/VHJ4-A/VHJ407Q.Seq.d/                        642   0.0
SSD218 (SSD218Q) /CSM/SS/SSD2-A/SSD218Q.Seq.d/                        507   e-143
VSA115 (VSA115Q) /CSM/VS/VSA1-A/VSA115Q.Seq.d/                        392   e-108
VHM662 (VHM662Q) /CSM/VH/VHM6-C/VHM662Q.Seq.d/                         36   0.44

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL731634|AL731634.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033P05.    46  0.36  1
BZ125075|BZ125075.1 CH230-404H18.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-404H18, DNA sequence.    34  0.72  3
AC021043|AC021043.4 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete sequence.    48  1.0  3
BD226150|BD226150.1 Glaucoma therapeutics and diagnostics based on a novel human transcription factor.    44  1.4  1
AR140209|AR140209.1 Sequence 1 from patent US 6207450.            44  1.4  1
AR102796|AR102796.1 Sequence 1 from patent US 6087107.            44  1.4  1
AF048693|AF048693.1 Homo sapiens transcription factor forkhead-like 7 (FKHL7) gene, complete cds.    44  1.4  1
CD723788|CD723788.1 oj26e06.y1 Human lacrimal gland, unamplified: oj Homo sapiens cDNA clone oj26e06 5', mRNA sequence.    44  1.4  1
AI453830|AI453830.1 tj47e05.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone IMAGE:2144672 3' similar to SW:MFH1_HUMAN Q99958 MESENCHYME FORK HEAD PROTEIN 1 ;, mRNA sequence.    44  1.4  1
BI914918|BI914918.1 603181005F1 NIH_MGC_121 Homo sapiens cDNA clone IMAGE:5245153 5', mRNA sequence.    44  1.4  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM412317_3311(AM412317|pid:none) Clostridium botulinum A str. AT...    34   1.8
(P75830) RecName: Full=Macrolide-specific efflux protein macA; F...    33   4.0
CT827952_5(CT827952|pid:none) Oryza sativa genomic DNA, chromoso...    33   4.0
CP000970_2212(CP000970|pid:none) Escherichia coli SMS-3-5, compl...    33   4.0
AE005174_960(AE005174|pid:none) Escherichia coli O157:H7 EDL933,...    33   4.0
AP008210_1885(AP008210|pid:none) Oryza sativa (japonica cultivar...    33   4.0
AL662950_12(AL662950|pid:none) Oryza sativa genomic DNA, chromos...    33   4.0
CP000038_809(CP000038|pid:none) Shigella sonnei Ss046, complete ...    33   4.0
AP009240_936(AP009240|pid:none) Escherichia coli SE11 DNA, compl...    33   4.0
CP000247_878(CP000247|pid:none) Escherichia coli 536, complete g...    32   5.2

 psg: 0.50  gvh: 0.10  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SSI411 is nuc

>SSI411F.Seq
AGAAAAATGCAAACTGTACGTGGTGAACCAGTCATTGAAAATATCAGAGAACATTTAGAT
AAAATACCAACACCAGAGAATAGAAAATATGTGAATGATGCCACTACATATAAATCAACA
CAAACATATCTTAGATTTTATGGTAGCACTGATAAAGGTGAGATAAGATACGAAAAATCA
CCACAATTTCACAGAATTTTAAGAGAAAACGGTTTCTCAATGGATCCAGTTCAAAAAGTT
TCTTTATTTAGACAAGGCAAAGTTAGAGTTGTTGGTCCACATCAAGTTATCCCATTAAAA
GGAGAAAAATTGGATATTCCAAAATATTATTCAAATCAAGAAATTGATTATAAAGCATAT
TTTGAAACCCTCAAACCAACTGAAACTCACTAAATAATGTAAACGAATAAATATTAATAA
TAAAAAATACAAGATATA----------