>SSI396 (SSI396Q) /CSM/SS/SSI3-D/SSI396Q.Seq.d/
XXXXXXXXXXGTCGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGT
CTTTGTTCCTCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGC
CTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTG
GGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTT
TGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGTAATCCCTTTCTGCTTT
CTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGG
TGTTAGATTCATTCCATACAGTGCCACTCGTATTCTTTCTGGTTCTGAAGATGATGAATA
AATCATTTAACTAACTAAATAAATAAATAAATAAATAAATAAATAAAATAAAATAAAATA
AAATAAAACTTAAAAGGTGTTTTTAATAAGAAAAAAAAAA

---ALYTGHHGEEFEMGEVFVPQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWE
RILIGQVERGNPFLAFVGFGAWLGASVAVLLLM*slsaflhalrlhwvefqnkfyigdgv
rfipysatrilsgsedde*ii*ltk*ink*ink*nkik*nkt*kvflirkkk

Frame A:
---slstlvitvknlkwvkslflksfipsslfwvlfqilplifvyglfhwltlsyllyfg
nvfslvksnvvihswlslvlvlg*vplllyfylcnpfllsctlldfig*nskinsilvmv
ldsfhtvplvfflvlkmmnksfn*lnk*ink*inkik*nkiklkrcf**ekk


Frame B:
---rslhwssr*ri*ng*slcssshsyhrvcfgccfkycllssfmgsfigsl*vifcilg
tyshwssrtw*silgfrwfwclvrclccctftyvipfcflars*tslgripk*ilyw*wc
*ihsiqchsysfwf*r**inhltn*ink*ink*ik*nkik*nlkgvfnkkkk


Frame C:
---ALYTGHHGEEFEMGEVFVPQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWE
RILIGQVERGNPFLAFVGFGAWLGASVAVLLLM*slsaflhalrlhwvefqnkfyigdgv
rfipysatrilsgsedde*ii*ltk*ink*ink*nkik*nkt*kvflirkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI396 (SSI396Q) /CSM/SS/SSI3-D/SSI396Q.Seq.d/                        842   0.0
FC-AD20 (FC-AD20Q) /CSM/FC/FC-AD/FC-AD20Q.Seq.d/                      821   0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/                        815   0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/                        815   0.0
AHK216 (AHK216Q) /CSM/AH/AHK2-A/AHK216Q.Seq.d/                        815   0.0
AHN828 (AHN828Q) /CSM/AH/AHN8-B/AHN828Q.Seq.d/                        813   0.0
AHG746 (AHG746Q) /CSM/AH/AHG7-B/AHG746Q.Seq.d/                        809   0.0
CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/                        805   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                        801   0.0
AHB885 (AHB885Q) /CSM/AH/AHB8-D/AHB885Q.Seq.d/                        801   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.   753  0.0  2
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    64  4e-12  2
BM301463|BM301463.1 MCR046C02_25968 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment prescreened for removal of highly abundant transcripts Mesembryanthemum crystallinum cDNA clone MCR046C02 5, mRNA sequence.    46  3e-09  3
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    72  7e-09  1
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    72  7e-09  1
AZ533924|AZ533924.1 ENTDB74TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    50  4e-08  2
AJ438978|AJ438978.1 Mesembryanthemum crystallinum mRNA for putative vacuolar ATPase  subunit 100 kDa subunit (vpha-a gene).    46  5e-08  3
BU803326|BU803326.1 SJFATD08 SJF Schistosoma japonicum cDNA, mRNA sequence.    52  6e-07  2
C67631|C67631.1 C.elegans cDNA clone yk307a1 : 5' end, single read.    46  7e-07  3
CB405933|CB405933.1 OSTR059G3_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    46  1e-06  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   217   2e-55
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   217   2e-55
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   133   3e-30
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   132   4e-30
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   132   4e-30
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   132   4e-30
AY123133_1(AY123133|pid:none) Griffithsia japonica vacuolar prot...   132   4e-30
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   132   7e-30
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   130   3e-29
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   127   1e-28

 psg: 0.75  gvh: 0.62  alm: 0.27  top: 0.53  tms: 0.07  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSI396 is cyt

>SSI396Z.Seq
----------GTCGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGT
CTTTGTTCCTCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGC
CTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTG
GGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTT
TGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGTAATCCCTTTCTGCTTT
CTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGG
TGTTAGATTCATTCCATACAGTGCCACTCGTATTCTTTCTGGTTCTGAAGATGATGAATA
AATCATTTAACTAACTAAATAAATAAATAAATAAATAAATAAATAAAATAAAATAAAATA
AAATAAAACTTAAAAGGTGTTTTTAATAAGAAAAAAAAAA